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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28729 | + | 3681 | 88 | 19 | -22.4 | YP_067940 | 5' arm 3' arm | ||
| 28938 | - | 5817 | 87 | 24.5 | -21.2 | YP_067940 | 5' arm 3' arm | ||
| 28935 | - | 4456 | 88 | 19.5 | -22.9 | YP_067940 | 5' arm 3' arm | ||
| 28725 | + | 1817 | 85 | 19 | -23.6 | YP_067940 | 5' arm 3' arm | ||
| 28933 | - | 2068 | 88 | 21 | -21.7 | YP_067940 | 5' arm 3' arm | ||
| 28998 | - | 31300 | 86 | 19.5 | -20.8 | YP_067943 | 5' arm 3' arm | ||
| 28999 | - | 31484 | 90 | 20 | -24.2 | YP_067943 | 5' arm 3' arm | ||
| 29001 | - | 32056 | 89 | 22 | -21.1 | YP_067943 | 5' arm 3' arm | ||
| 28997 | - | 30839 | 88 | 23 | -25.2 | YP_067943 | 5' arm 3' arm | ||
| 29000 | - | 31589 | 89 | 21 | -26.5 | YP_067943 | 5' arm 3' arm | ||
| 29002 | - | 32199 | 90 | 19.5 | -20.2 | YP_067943 | 5' arm 3' arm | ||
| 28764 | + | 38289 | 89 | 19.5 | -22 | YP_067945 | 5' arm 3' arm | ||
| 28766 | + | 40029 | 90 | 19.5 | -21.5 | YP_067946 | 5' arm 3' arm | ||
| 28765 | + | 38540 | 88 | 23.5 | -22.3 | YP_067946 | 5' arm 3' arm | ||
| 29009 | - | 38627 | 88 | 21 | -22 | YP_067946 | 5' arm 3' arm | ||
| 28767 | + | 40720 | 90 | 20 | -27.9 | YP_067947 | 5' arm 3' arm | ||
| 28769 | + | 41576 | 88 | 21.5 | -34.7 | YP_067948 | 5' arm 3' arm | ||
| 28768 | + | 41433 | 90 | 22 | -27.5 | YP_067948 | 5' arm 3' arm | ||
| 28770 | + | 41892 | 88 | 19 | -23.1 | YP_067948 | 5' arm 3' arm | ||
| 28771 | + | 42827 | 89 | 20 | -21.5 | YP_067948 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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