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| GenBank Identifier | RefSeq Acc. | Name |
| 18653809 | NC_003401.1 | Cercopithecine herpesvirus 17 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 13186 | - | 12553 | 88 | 22.5 | -24.2 | NP_570749 | 5' arm 3' arm | ||
| 13189 | - | 13119 | 87 | 19 | -22.1 | NP_570749 | 5' arm 3' arm | ||
| 13190 | - | 13597 | 89 | 26 | -34 | NP_570749 | 5' arm 3' arm | ||
| 13185 | - | 12382 | 89 | 24.5 | -21.1 | NP_570749 | 5' arm 3' arm | ||
| 13188 | - | 12889 | 86 | 20 | -23.9 | NP_570749 | 5' arm 3' arm | ||
| 13194 | - | 15747 | 88 | 19.5 | -23.9 | NP_570750 | 5' arm 3' arm | ||
| 13192 | - | 14988 | 90 | 20.5 | -19.9 | NP_570750 | 5' arm 3' arm | ||
| 13196 | - | 16382 | 82 | 19 | -21.9 | NP_570750 | 5' arm 3' arm | ||
| 13193 | - | 15134 | 87 | 19 | -21.8 | NP_570750 | 5' arm 3' arm | ||
| 13191 | - | 14293 | 89 | 22 | -32.7 | NP_570750 | 5' arm 3' arm | ||
| 13195 | - | 16232 | 89 | 21.5 | -25.7 | NP_570750 | 5' arm 3' arm | ||
| 13104 | + | 15017 | 90 | 19 | -30.6 | NP_570750 | 5' arm 3' arm | ||
| 13103 | + | 14849 | 87 | 20.5 | -22.7 | NP_570750 | 5' arm 3' arm | ||
| 13102 | + | 14206 | 86 | 24 | -28 | NP_570750 | 5' arm 3' arm | ||
| 13105 | + | 18153 | 90 | 21 | -21.8 | NP_570751 | 5' arm 3' arm | ||
| 13106 | + | 18320 | 86 | 19 | -23.2 | NP_570751 | 5' arm 3' arm | ||
| 13198 | - | 18338 | 89 | 21.5 | -20.1 | NP_570751 | 5' arm 3' arm | ||
| 13199 | - | 18501 | 88 | 22 | -21.5 | NP_570751 | 5' arm 3' arm | ||
| 13202 | - | 19255 | 89 | 27 | -20.7 | NP_570752 | 5' arm 3' arm | ||
| 13203 | - | 19723 | 90 | 21.5 | -22 | NP_570752 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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