miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
52139181 NC_006273.1 Human herpesvirus 5 (wild type strain Merlin)

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
29928 + 169287 80 19 -19.9 5' arm      3' arm
29919 + 161443 87 19.5 -23.6 5' arm      3' arm
1589 + 49490 85 26.5 -28.7       
29803 + 93009 85 21 -26.7 5' arm      3' arm
29805 + 93551 90 20.5 -22.5 5' arm      3' arm
29808 + 95901 90 24.5 -24.9 5' arm      3' arm
29811 + 98207 79 21 -24.5 5' arm      3' arm
29897 + 147615 89 20 -33.7 5' arm      3' arm
29855 + 125387 84 19.5 -24.1 5' arm      3' arm
1737 + 159071 90 19.5 -27 5' arm      3' arm
1736 + 156158 89 24.5 -22.7 5' arm      3' arm
1763 + 183218 90 27.5 -27.2 5' arm      3' arm
1565 + 37588 90 23 -25.1 5' arm      3' arm
1762 + 182740 88 23.5 -21.7 5' arm      3' arm
29853 + 124469 88 21.5 -23.5 5' arm      3' arm
29947 + 195666 88 22 -34.6 5' arm      3' arm
29810 + 97793 90 19 -23 5' arm      3' arm
29952 + 201362 89 27.5 -21 hcmv-mir-US4 5' arm      3' arm
1761 + 182421 89 21 -29.9 5' arm      3' arm
29833 + 114138 89 25 -23.9 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.