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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10923 | - | 10649 | 88 | 20 | -24.7 | NP_116336 | 5' arm 3' arm | ||
| 10924 | - | 12125 | 90 | 20 | -27.1 | NP_116336 | 5' arm 3' arm | ||
| 10711 | + | 10567 | 90 | 21.5 | -28.5 | NP_116336 | 5' arm 3' arm | ||
| 10925 | - | 13773 | 87 | 19 | -20.8 | NP_116338 | 5' arm 3' arm | ||
| 10715 | + | 14599 | 86 | 26.5 | -30.9 | NP_116339 | 5' arm 3' arm | ||
| 10926 | - | 14883 | 89 | 21 | -25 | NP_116339 | 5' arm 3' arm | ||
| 10713 | + | 14368 | 88 | 21.5 | -25.8 | NP_116339 | 5' arm 3' arm | ||
| 10712 | + | 14270 | 89 | 24 | -24.9 | NP_116340 | 5' arm 3' arm | ||
| 10714 | + | 14470 | 89 | 19 | -28.8 | NP_116340 | 5' arm 3' arm | ||
| 10927 | - | 15137 | 90 | 19 | -23 | NP_116341 | 5' arm 3' arm | ||
| 10930 | - | 16647 | 89 | 25.5 | -36.2 | NP_116344 | 5' arm 3' arm | ||
| 10931 | - | 17736 | 87 | 27.5 | -24.9 | NP_116345 | 5' arm 3' arm | ||
| 10933 | - | 18775 | 89 | 21 | -20.4 | NP_116346 | 5' arm 3' arm | ||
| 10934 | - | 18872 | 90 | 22.5 | -21.8 | NP_116346 | 5' arm 3' arm | ||
| 10717 | + | 18613 | 90 | 21 | -21.8 | NP_116346 | 5' arm 3' arm | ||
| 10718 | + | 18895 | 79 | 19 | -26.6 | NP_116346 | 5' arm 3' arm | ||
| 10935 | - | 20536 | 90 | 23 | -26.8 | NP_116348 | 5' arm 3' arm | ||
| 10719 | + | 28626 | 90 | 21 | -24.7 | NP_116355 | 5' arm 3' arm | ||
| 10720 | + | 32336 | 86 | 20.5 | -22.1 | NP_116359 | 5' arm 3' arm | ||
| 10721 | + | 33616 | 86 | 20.5 | -28.8 | NP_116360 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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