miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9635581 NC_002484.1 Pseudomonas phage D3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8826 + 19351 89 20.5 -20.4 NP_061523 5' arm      3' arm
8906 - 19102 90 26 -27.5 NP_061523 5' arm      3' arm
8828 + 20690 89 22 -19.6 NP_061523 5' arm      3' arm
8827 + 19517 85 19 -22.8 NP_061523 5' arm      3' arm
8829 + 24931 90 23 -22.8 NP_061526 5' arm      3' arm
8830 + 25803 88 19.5 -23.2 NP_061527 5' arm      3' arm
8907 - 26305 90 20 -24.1 NP_061528 5' arm      3' arm
8832 + 26651 90 19 -24.6 NP_061530 5' arm      3' arm
8908 - 27321 86 19.5 -22.4 NP_061531 5' arm      3' arm
8835 + 27953 87 24 -29.4 NP_061531 5' arm      3' arm
8833 + 27623 87 19.5 -23.4 NP_061531 5' arm      3' arm
8834 + 27808 85 21 -27.6 NP_061531 5' arm      3' arm
8909 - 28733 88 20 -23.5 NP_061533 5' arm      3' arm
8837 + 28813 89 20.5 -22.9 NP_061534 5' arm      3' arm
8910 - 29072 88 20.5 -21.2 NP_061535 5' arm      3' arm
8839 + 29718 90 20 -24.4 NP_061536 5' arm      3' arm
8838 + 29444 87 22 -20 NP_061536 5' arm      3' arm
8856 + 38980 90 21.5 -23.9 NP_061536 5' arm      3' arm
8842 + 31426 89 19 -21.4 NP_061538 5' arm      3' arm
8911 - 32398 87 19 -25.9 NP_061539 5' arm      
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.