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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23580 | + | 24278 | 90 | 20.5 | -25.4 | NP_954907 | 5' arm 3' arm | ||
| 23577 | + | 23748 | 90 | 21 | -19.5 | NP_954907 | 5' arm 3' arm | ||
| 23576 | + | 23416 | 90 | 21 | -20.3 | NP_954907 | 5' arm 3' arm | ||
| 23579 | + | 24189 | 86 | 19.5 | -26.2 | NP_954907 | 5' arm 3' arm | ||
| 23733 | - | 24121 | 88 | 20.5 | -21.12 | NP_954907 | 5' arm 3' arm | ||
| 23732 | - | 23742 | 89 | 20 | -22.9 | NP_954907 | 5' arm 3' arm | ||
| 23734 | - | 24216 | 87 | 21 | -23.3 | NP_954907 | 5' arm 3' arm | ||
| 23731 | - | 23642 | 89 | 20 | -19.8 | NP_954907 | 5' arm 3' arm | ||
| 23578 | + | 24034 | 88 | 20.5 | -25.2 | NP_954907 | 5' arm 3' arm | ||
| 23736 | - | 25225 | 89 | 19.5 | -22.81 | NP_954908 | 5' arm 3' arm | ||
| 23737 | - | 26037 | 88 | 21 | -23 | NP_954908 | 5' arm 3' arm | ||
| 23583 | + | 26296 | 89 | 22.5 | -19.9 | NP_954908 | 5' arm 3' arm | ||
| 23735 | - | 25024 | 81 | 21 | -29 | NP_954908 | 5' arm 3' arm | ||
| 23739 | - | 26384 | 89 | 22.5 | -20.1 | NP_954908 | 5' arm 3' arm | ||
| 23582 | + | 25802 | 90 | 19.5 | -24.8 | NP_954908 | 5' arm 3' arm | ||
| 23581 | + | 24544 | 90 | 19 | -23.1 | NP_954908 | 5' arm 3' arm | ||
| 23740 | - | 26568 | 89 | 23.5 | -30.3 | NP_954908 | 5' arm 3' arm | ||
| 23738 | - | 26202 | 87 | 21.5 | -26.7 | NP_954908 | 5' arm 3' arm | ||
| 23742 | - | 27686 | 90 | 21.5 | -23 | NP_954909 | 5' arm 3' arm | ||
| 23586 | + | 28586 | 90 | 21 | -24.8 | NP_954909 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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