miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
52139181 NC_006273.1 Human herpesvirus 5 (wild type strain Merlin)

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
29947 + 195666 88 22 -34.6 5' arm      3' arm
29928 + 169287 80 19 -19.9 5' arm      3' arm
29935 + 176404 90 21 -19.4 5' arm      3' arm
29919 + 161443 87 19.5 -23.6 5' arm      3' arm
29954 + 202262 90 26 -27.5 #hcmv-mir-US5-1       3' arm
1589 + 49490 85 26.5 -28.7       
2013 - 197195 88 24.5 -25.5 5' arm      3' arm
2003 - 189670 90 26.5 -23.8 5' arm      3' arm
29983 + 232225 88 24.5 -26.2 5' arm      3' arm
2004 - 190434 90 20 -25 5' arm      3' arm
1761 + 182421 89 21 -29.9 5' arm      3' arm
29985 + 234870 76 19 -22.4 5' arm      3' arm
1764 + 186190 88 20 -28.1 5' arm      3' arm
2050 - 225412 89 20 -22.2 5' arm      3' arm
2040 - 220139 89 21.5 -27.6 5' arm      3' arm
1580 + 44534 85 20.5 -25.2 5' arm      3' arm
2037 - 216282 88 21.5 -27.2 5' arm      3' arm
2028 - 209898 89 20 -20.1 5' arm      3' arm
2011 - 193905 88 23.5 -27.3 5' arm      3' arm
1595 + 54745 89 21 -24 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.