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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10938 | - | 35242 | 90 | 25.5 | -24.9 | NP_116361 | 5' arm 3' arm | ||
| 10939 | - | 35413 | 89 | 20.5 | -21.6 | NP_116361 | 5' arm 3' arm | ||
| 10937 | - | 34777 | 87 | 22 | -21.8 | NP_116361 | 5' arm 3' arm | ||
| 10722 | + | 36243 | 89 | 20.5 | -25.6 | NP_116364 | 5' arm 3' arm | ||
| 10941 | - | 38065 | 89 | 21 | -24.3 | NP_116367 | 5' arm 3' arm | ||
| 10942 | - | 38381 | 90 | 23.5 | -25 | NP_116367 | 5' arm 3' arm | ||
| 10723 | + | 37977 | 89 | 19.5 | -32.5 | NP_116367 | 5' arm 3' arm | ||
| 10944 | - | 39355 | 87 | 19 | -21.5 | NP_116368 | 5' arm 3' arm | ||
| 10946 | - | 40785 | 90 | 21 | -24.4 | NP_116368 | 5' arm 3' arm | ||
| 10945 | - | 40508 | 89 | 19.5 | -24.8 | NP_116368 | 5' arm 3' arm | ||
| 10725 | + | 39738 | 90 | 19.5 | -19.73 | NP_116368 | 5' arm 3' arm | ||
| 10947 | - | 41873 | 90 | 23.5 | -23.6 | NP_116369 | 5' arm 3' arm | ||
| 10726 | + | 41501 | 88 | 20.5 | -23.1 | NP_116369 | 5' arm 3' arm | ||
| 10949 | - | 43063 | 82 | 21.5 | -22.7 | NP_116370 | 5' arm 3' arm | ||
| 10948 | - | 42734 | 89 | 20 | -20 | NP_116370 | 5' arm 3' arm | ||
| 10730 | + | 43633 | 87 | 19.5 | -22.8 | NP_116370 | 5' arm 3' arm | ||
| 10727 | + | 42680 | 90 | 19.5 | -31 | NP_116370 | 5' arm 3' arm | ||
| 10728 | + | 42893 | 89 | 21 | -20.3 | NP_116370 | 5' arm 3' arm | ||
| 10729 | + | 43154 | 90 | 21 | -20.6 | NP_116370 | 5' arm 3' arm | ||
| 10950 | - | 44773 | 90 | 20 | -25.3 | NP_116372 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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