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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23586 | + | 28586 | 90 | 21 | -24.8 | NP_954909 | 5' arm 3' arm | ||
| 23585 | + | 27493 | 90 | 20.5 | -27.4 | NP_954909 | 5' arm 3' arm | ||
| 23741 | - | 27221 | 89 | 21.5 | -22.4 | NP_954909 | 5' arm 3' arm | ||
| 23743 | - | 27812 | 88 | 21.5 | -23.5 | NP_954909 | 5' arm 3' arm | ||
| 23745 | - | 28588 | 89 | 20 | -20.8 | NP_954909 | 5' arm 3' arm | ||
| 23742 | - | 27686 | 90 | 21.5 | -23 | NP_954909 | 5' arm 3' arm | ||
| 23746 | - | 29613 | 90 | 24 | -21.2 | NP_954910 | 5' arm 3' arm | ||
| 23588 | + | 31032 | 90 | 23 | -27.1 | NP_954910 | 5' arm 3' arm | ||
| 23587 | + | 29616 | 89 | 21 | -25.5 | NP_954910 | 5' arm 3' arm | ||
| 23592 | + | 41577 | 90 | 21 | -27.1 | NP_954911 | 5' arm 3' arm | ||
| 23591 | + | 38980 | 89 | 20 | -23.8 | NP_954911 | 5' arm 3' arm | ||
| 23748 | - | 39456 | 88 | 20 | -24.1 | NP_954911 | 5' arm 3' arm | ||
| 23590 | + | 36899 | 88 | 20.5 | -21.9 | NP_954911 | 5' arm 3' arm | ||
| 23593 | + | 41682 | 89 | 20 | -28.5 | NP_954911 | 5' arm 3' arm | ||
| 23589 | + | 32572 | 90 | 21 | -25.2 | NP_954911 | 5' arm 3' arm | ||
| 23747 | - | 37946 | 89 | 19 | -26.2 | NP_954911 | 5' arm 3' arm | ||
| 23595 | + | 42901 | 89 | 20.5 | -22.11 | NP_954913 | 5' arm 3' arm | ||
| 23749 | - | 42989 | 89 | 19 | -19.8 | NP_954913 | 5' arm 3' arm | ||
| 23594 | + | 42786 | 90 | 24 | -24.1 | NP_954913 | 5' arm 3' arm | ||
| 23750 | - | 43586 | 86 | 20 | -22.1 | NP_954914 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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