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| GenBank Identifier | RefSeq Acc. | Name |
| 52139181 | NC_006273.1 | Human herpesvirus 5 (wild type strain Merlin) |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29985 | + | 234870 | 76 | 19 | -22.4 | 5' arm 3' arm | |||
| 29983 | + | 232225 | 88 | 24.5 | -26.2 | 5' arm 3' arm | |||
| 2005 | - | 190590 | 86 | 21 | -27.7 | 5' arm 3' arm | |||
| 1998 | - | 182266 | 90 | 23 | -24.6 | 5' arm 3' arm | |||
| 1761 | + | 182421 | 89 | 21 | -29.9 | 5' arm 3' arm | |||
| 1967 | - | 152826 | 89 | 20 | -20.8 | 5' arm 3' arm | |||
| 1961 | - | 147483 | 85 | 21 | -19.4 | 5' arm 3' arm | |||
| 1580 | + | 44534 | 85 | 20.5 | -25.2 | 5' arm 3' arm | |||
| 1954 | - | 143592 | 89 | 19.5 | -25 | 5' arm 3' arm | |||
| 1927 | - | 97907 | 90 | 24 | -23.9 | 5' arm 3' arm | |||
| 1926 | - | 97505 | 69 | 20.5 | -25.5 | 5' arm 3' arm | |||
| 1924 | - | 95607 | 89 | 21 | -26.5 | 5' arm 3' arm | |||
| 1589 | + | 49490 | 85 | 26.5 | -28.7 | ||||
| 2002 | - | 189566 | 78 | 19.5 | -20.5 | 5' arm 3' arm | |||
| 2001 | - | 185866 | 90 | 25 | -28.7 | 5' arm 3' arm | |||
| 1999 | - | 182811 | 86 | 20.5 | -24.5 | 5' arm 3' arm | |||
| 2000 | - | 183171 | 89 | 19 | -21.9 | 5' arm 3' arm | |||
| 1990 | - | 166415 | 89 | 21 | -24.8 | 5' arm 3' arm | |||
| 1979 | - | 159017 | 88 | 19.5 | -24.5 | 5' arm 3' arm | |||
| 29986 | + | 235181 | 90 | 19 | -22.8 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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