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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 16180 | - | 182946 | 90 | 20 | -21 | 5' arm 3' arm | |||
| 16167 | - | 164435 | 86 | 19 | -24.9 | 5' arm 3' arm | |||
| 16066 | - | 91623 | 89 | 21 | -21.8 | 5' arm 3' arm | |||
| 16071 | - | 92932 | 90 | 23 | -32.1 | 5' arm 3' arm | |||
| 16070 | - | 92566 | 90 | 21 | -22.7 | 5' arm 3' arm | |||
| 16062 | - | 88999 | 90 | 20 | -22.8 | 5' arm 3' arm | |||
| 16061 | - | 88832 | 88 | 20 | -28.9 | 5' arm 3' arm | |||
| 16063 | - | 89469 | 87 | 21 | -26.1 | 5' arm 3' arm | |||
| 16064 | - | 90549 | 88 | 19 | -24.3 | 5' arm 3' arm | |||
| 16065 | - | 91185 | 82 | 19 | -23.8 | 5' arm 3' arm | |||
| 15700 | + | 42101 | 90 | 20 | -23.6 | 5' arm 3' arm | |||
| 15698 | + | 41658 | 90 | 19.5 | -23.7 | 5' arm 3' arm | |||
| 16181 | - | 183105 | 84 | 19.5 | -25.1 | 5' arm 3' arm | |||
| 15699 | + | 41873 | 90 | 19.5 | -24.6 | 5' arm 3' arm | |||
| 15707 | + | 48200 | 90 | 24 | -20.9 | 5' arm 3' arm | |||
| 15705 | + | 47670 | 90 | 23.5 | -24.2 | 5' arm 3' arm | |||
| 15708 | + | 48508 | 88 | 21.5 | -24.6 | 5' arm 3' arm | |||
| 15703 | + | 45641 | 89 | 20 | -24.3 | 5' arm 3' arm | |||
| 15706 | + | 48109 | 89 | 20 | -19.81 | 5' arm 3' arm | |||
| 16067 | - | 91768 | 90 | 19 | -27.3 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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