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| GenBank Identifier | RefSeq Acc. | Name |
| 41179361 | NC_005357.1 | Bordetella phage BPP-1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 26577 | - | 28358 | 87 | 21.5 | -26.2 | NP_958698 | 5' arm 3' arm | ||
| 26580 | - | 29578 | 90 | 22.5 | -19.5 | NP_958698 | 5' arm 3' arm | ||
| 26520 | + | 27694 | 88 | 19.5 | -26 | NP_958698 | 5' arm 3' arm | ||
| 26576 | - | 28025 | 86 | 20 | -25.4 | NP_958698 | 5' arm 3' arm | ||
| 26578 | - | 29010 | 86 | 21 | -19.4 | NP_958698 | 5' arm 3' arm | ||
| 26579 | - | 29467 | 90 | 21 | -24.3 | NP_958698 | 5' arm 3' arm | ||
| 26575 | - | 27357 | 86 | 20.5 | -21.5 | NP_958698 | 5' arm 3' arm | ||
| 26582 | - | 30335 | 88 | 22 | -22.5 | NP_958699 | 5' arm 3' arm | ||
| 26522 | + | 30380 | 89 | 20.5 | -22 | NP_958699 | 5' arm 3' arm | ||
| 26581 | - | 29942 | 89 | 19.5 | -22.4 | NP_958699 | 5' arm 3' arm | ||
| 26523 | + | 30548 | 89 | 20.5 | -23.3 | NP_958700 | 5' arm 3' arm | ||
| 26524 | + | 30643 | 89 | 24 | -27.4 | NP_958700 | 5' arm 3' arm | ||
| 26583 | - | 31156 | 85 | 20 | -20.4 | NP_958701 | 5' arm 3' arm | ||
| 26525 | + | 31275 | 84 | 20 | -25.1 | NP_958701 | 5' arm 3' arm | ||
| 26584 | - | 31748 | 90 | 22 | -21.9 | NP_958702 | 5' arm 3' arm | ||
| 26526 | + | 31562 | 89 | 19.5 | -22.3 | NP_958702 | 5' arm 3' arm | ||
| 26587 | - | 32294 | 88 | 19.5 | -19.6 | NP_958703 | 5' arm 3' arm | ||
| 26590 | - | 32652 | 86 | 19.5 | -26.1 | NP_958704 | 5' arm 3' arm | ||
| 26588 | - | 32395 | 89 | 24 | -24 | NP_958704 | 5' arm 3' arm | ||
| 26589 | - | 32507 | 89 | 26.5 | -25 | NP_958704 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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