miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566021 NC_004682.1 Mycobacteriophage Bxz2 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18582 + 24559 85 22 -23.3 NP_817621 5' arm      3' arm
18712 - 25544 87 21 -22.2 NP_817622 5' arm      3' arm
18584 + 25571 90 19 -23.4 NP_817622 5' arm      3' arm
18587 + 26722 88 19 -23.6 NP_817623 5' arm      3' arm
18585 + 26184 88 19 -24.8 NP_817623 5' arm      3' arm
18588 + 26896 87 20 -22.6 NP_817623 5' arm      3' arm
18589 + 27106 88 21 -28.6 NP_817623 5' arm      3' arm
18586 + 26275 89 21.5 -26.7 NP_817623 5' arm      3' arm
18714 - 26798 90 22 -20.1 NP_817623 5' arm      3' arm
18715 - 27216 88 19.5 -23.8 NP_817623 5' arm      3' arm
18713 - 26029 90 20 -20.4 NP_817623 5' arm      3' arm
18591 + 27689 85 20 -29 NP_817624 5' arm      3' arm
18590 + 27488 90 19.5 -20.9 NP_817624 5' arm      3' arm
18593 + 28216 90 22 -21.1 NP_817627 5' arm      3' arm
18717 - 29072 88 20 -29.5 NP_817628 5' arm      3' arm
18594 + 28880 88 22 -23.2 NP_817628 5' arm      3' arm
18718 - 29229 90 20 -25.3 NP_817629 5' arm      3' arm
18595 + 29097 89 20 -27.9 NP_817629 5' arm      3' arm
18596 + 29640 87 23.5 -23.6 NP_817631 5' arm      3' arm
18719 - 29727 88 21.5 -21.1 NP_817631 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.