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| GenBank Identifier | RefSeq Acc. | Name |
| 9635581 | NC_002484.1 | Pseudomonas phage D3 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 8920 | - | 41295 | 89 | 21.5 | -25 | NP_061559 | 5' arm 3' arm | ||
| 8859 | + | 41976 | 89 | 20 | -22 | NP_061560 | 5' arm 3' arm | ||
| 8860 | + | 42159 | 85 | 19.5 | -22.3 | NP_061560 | 5' arm 3' arm | ||
| 8861 | + | 42716 | 89 | 20 | -19.6 | NP_061561 | 5' arm 3' arm | ||
| 8921 | - | 43170 | 90 | 19 | -21.9 | NP_061562 | 5' arm 3' arm | ||
| 8863 | + | 43298 | 87 | 21.5 | -25.2 | NP_061562 | 5' arm 3' arm | ||
| 8862 | + | 43081 | 90 | 24 | -27.8 | NP_061562 | 5' arm 3' arm | ||
| 8922 | - | 43307 | 89 | 20 | -24.2 | NP_061562 | 5' arm 3' arm | ||
| 8864 | + | 44722 | 73 | 20.5 | -22.9 | NP_061564 | 5' arm 3' arm | ||
| 8865 | + | 45931 | 86 | 19.5 | -22.3 | NP_061565 | 5' arm 3' arm | ||
| 8925 | - | 46881 | 88 | 21 | -26.2 | NP_061568 | 5' arm 3' arm | ||
| 8866 | + | 47136 | 90 | 20.5 | -25.3 | NP_061569 | 5' arm 3' arm | ||
| 8927 | - | 47868 | 85 | 20 | -21 | NP_061569 | 5' arm 3' arm | ||
| 8926 | - | 47422 | 90 | 20.5 | -33.1 | NP_061569 | 5' arm 3' arm | ||
| 8928 | - | 48643 | 90 | 19 | -20.5 | NP_061570 | 5' arm 3' arm | ||
| 8867 | + | 48196 | 82 | 19 | -25.8 | NP_061570 | 5' arm 3' arm | ||
| 8929 | - | 48741 | 87 | 21.5 | -21.7 | NP_061570 | 5' arm | ||
| 8868 | + | 49467 | 90 | 20 | -26.4 | NP_061572 | 5' arm 3' arm | ||
| 8930 | - | 49613 | 86 | 22 | -22.3 | NP_061572 | 5' arm 3' arm | ||
| 8869 | + | 50828 | 89 | 20 | -19.91 | NP_061575 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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