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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29103 | - | 129272 | 89 | 22.5 | -21 | 5' arm 3' arm | |||
| 29065 | - | 98990 | 90 | 21 | -36 | 5' arm 3' arm | |||
| 29004 | - | 34963 | 89 | 20 | -21.9 | 5' arm 3' arm | |||
| 29006 | - | 35396 | 86 | 20 | -28.4 | 5' arm 3' arm | |||
| 28760 | + | 34442 | 88 | 26 | -22.3 | 5' arm 3' arm | |||
| 28762 | + | 36661 | 81 | 26 | -23.1 | rlcv-mir-rL1-2 | 3' arm | ||
| 28763 | + | 36989 | 85 | 24 | -25.4 | 5' arm 3' arm | |||
| 28979 | - | 24158 | 90 | 24.5 | -24.1 | 5' arm 3' arm | |||
| 28989 | - | 27773 | 90 | 20 | -21.1 | 5' arm 3' arm | |||
| 28978 | - | 23551 | 85 | 22.5 | -24.5 | 5' arm 3' arm | |||
| 28982 | - | 25024 | 89 | 23.5 | -32.61 | 5' arm 3' arm | |||
| 28993 | - | 28959 | 88 | 21.5 | -20.7 | 5' arm 3' arm | |||
| 28992 | - | 28829 | 89 | 21.5 | -24.8 | 5' arm 3' arm | |||
| 28991 | - | 28493 | 89 | 21 | -26.1 | 5' arm 3' arm | |||
| 28988 | - | 27382 | 90 | 21 | -25.4 | 5' arm 3' arm | |||
| 28994 | - | 29624 | 90 | 20 | -27 | 5' arm 3' arm | |||
| 28984 | - | 25748 | 89 | 21.5 | -24.8 | 5' arm 3' arm | |||
| 28976 | - | 22797 | 88 | 21.5 | -20.7 | 5' arm 3' arm | |||
| 29003 | - | 33564 | 77 | 20.5 | -26.1 | 5' arm 3' arm | |||
| 29045 | - | 84576 | 90 | 25.5 | -21.4 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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