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GenBank Identifier | RefSeq Acc. | Name |
50313241 | NC_001491.2 | Equid herpesvirus 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF![]() |
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
2677 | + | 84044 | 88 | 20.5 | -21 | YP_053090 | 5' arm 3' arm | ||
2785 | - | 88439 | 90 | 21.5 | -20.9 | YP_053090 | 5' arm 3' arm | ||
2786 | - | 88937 | 89 | 22.5 | -27.8 | YP_053090 | 5' arm 3' arm | ||
2782 | - | 85104 | 89 | 21 | -20.4 | YP_053091 | 5' arm 3' arm | ||
2679 | + | 86480 | 90 | 20 | -20.7 | YP_053091 | 5' arm 3' arm | ||
2678 | + | 84682 | 87 | 19.5 | -20.9 | YP_053091 | 5' arm 3' arm | ||
2784 | - | 87620 | 87 | 20 | -21.6 | YP_053092 | 5' arm 3' arm | ||
2783 | - | 87391 | 90 | 19.5 | -21.4 | YP_053092 | 5' arm 3' arm | ||
2681 | + | 87236 | 84 | 19 | -19.4 | YP_053092 | 5' arm 3' arm | ||
2680 | + | 86945 | 80 | 19.5 | -22.5 | YP_053092 | 5' arm 3' arm | ||
2682 | + | 87420 | 87 | 21.5 | -19.7 | YP_053092 | 5' arm 3' arm | ||
2787 | - | 89904 | 90 | 19.5 | -19.8 | YP_053094 | 5' arm 3' arm | ||
2683 | + | 90190 | 88 | 22 | -29.3 | YP_053094 | 5' arm 3' arm | ||
2789 | - | 93722 | 89 | 20 | -20 | YP_053096 | 5' arm 3' arm | ||
2685 | + | 94487 | 90 | 25 | -20.1 | YP_053097 | 5' arm 3' arm | ||
2790 | - | 98696 | 89 | 19 | -23.8 | YP_053098 | 5' arm 3' arm | ||
2686 | + | 97229 | 90 | 22 | -31.9 | YP_053098 | 5' arm 3' arm | ||
2688 | + | 98066 | 90 | 22 | -22.2 | YP_053098 | 5' arm 3' arm | ||
2687 | + | 97466 | 90 | 22 | -27.1 | YP_053098 | 5' arm 3' arm | ||
2689 | + | 99891 | 90 | 19 | -21.7 | YP_053099 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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