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| GenBank Identifier | RefSeq Acc. | Name |
| 28373214 | NC_001347.2 | Human herpesvirus 5 (laboratory strain AD169) |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 1927 | - | 97907 | 90 | 24 | -23.9 | 5' arm 3' arm | |||
| 1595 | + | 54745 | 89 | 21 | -24 | 5' arm 3' arm | |||
| 1808 | - | 7180 | 90 | 27.5 | -27.2 | 5' arm 3' arm | |||
| 30249 | - | 230634 | 90 | 20.5 | -22.1 | 5' arm 3' arm | |||
| 1818 | - | 27114 | 74 | 19.5 | -24.9 | 5' arm 3' arm | |||
| 1589 | + | 49490 | 85 | 26.5 | -28.7 | ||||
| 1923 | - | 93883 | 88 | 20.5 | -35.4 | 5' arm 3' arm | |||
| 1920 | - | 92602 | 81 | 19.5 | -19.6 | 5' arm 3' arm | |||
| 1862 | - | 53013 | 86 | 20.5 | -24 | 5' arm 3' arm | |||
| 1857 | - | 49578 | 90 | 28.5 | -32.9 | hcmv-mir-UL36 | |||
| 30237 | - | 221578 | 88 | 21.5 | -27.2 | 5' arm 3' arm | |||
| 1837 | - | 37935 | 90 | 22 | -35.3 | 5' arm 3' arm | |||
| 1924 | - | 95607 | 89 | 21 | -26.5 | 5' arm 3' arm | |||
| 1925 | - | 97388 | 90 | 20.5 | -19.9 | 5' arm 3' arm | |||
| 1926 | - | 97505 | 69 | 20.5 | -25.5 | 5' arm 3' arm | |||
| 1921 | - | 92789 | 90 | 25.5 | -24.2 | 5' arm 3' arm | |||
| 1922 | - | 93347 | 82 | 21.5 | -32.1 | 5' arm 3' arm | |||
| 1919 | - | 91665 | 87 | 24.5 | -22.1 | 5' arm 3' arm | |||
| 1913 | - | 87016 | 86 | 19 | -25.3 | 5' arm 3' arm | |||
| 2002 | - | 189566 | 78 | 19.5 | -20.5 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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