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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10964 | - | 53248 | 90 | 23 | -28.5 | NP_116380 | 5' arm 3' arm | ||
| 10739 | + | 53224 | 87 | 21 | -24.6 | NP_116380 | 5' arm 3' arm | ||
| 10740 | + | 54500 | 90 | 21.5 | -32.9 | NP_116381 | 5' arm 3' arm | ||
| 10966 | - | 54776 | 87 | 21.5 | -24.2 | NP_116381 | 5' arm 3' arm | ||
| 10965 | - | 53723 | 88 | 21 | -21.7 | NP_116381 | 5' arm 3' arm | ||
| 10968 | - | 55453 | 88 | 20 | -20.5 | NP_116381 | 5' arm 3' arm | ||
| 10967 | - | 55050 | 90 | 21 | -23.7 | NP_116381 | 5' arm 3' arm | ||
| 10971 | - | 56173 | 90 | 20.5 | -20.8 | NP_116383 | 5' arm 3' arm | ||
| 10972 | - | 56584 | 88 | 20.5 | -19.4 | NP_116383 | 5' arm 3' arm | ||
| 10970 | - | 55861 | 87 | 20 | -21.3 | NP_116383 | 5' arm 3' arm | ||
| 10974 | - | 57416 | 89 | 22 | -21.4 | NP_116384 | 5' arm 3' arm | ||
| 10976 | - | 59050 | 90 | 19.5 | -24.4 | NP_116385 | 5' arm 3' arm | ||
| 10978 | - | 59968 | 86 | 19.5 | -22.5 | NP_116385 | 5' arm 3' arm | ||
| 10977 | - | 59205 | 90 | 24.5 | -31.7 | NP_116385 | 5' arm 3' arm | ||
| 10975 | - | 58729 | 90 | 24.5 | -23.5 | NP_116385 | 5' arm 3' arm | ||
| 10979 | - | 60350 | 88 | 26 | -36.9 | NP_116385 | 5' arm 3' arm | ||
| 10742 | + | 62671 | 90 | 19.5 | -26.5 | NP_116386 | 5' arm 3' arm | ||
| 10741 | + | 62494 | 90 | 23 | -25.1 | NP_116386 | 5' arm 3' arm | ||
| 10985 | - | 63303 | 90 | 25 | -21.1 | NP_116386 | 5' arm 3' arm | ||
| 10986 | - | 63609 | 88 | 20.5 | -26.3 | NP_116386 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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