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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23604 | + | 50521 | 87 | 20.5 | -21.2 | NP_954918 | 5' arm 3' arm | ||
| 23611 | + | 53704 | 90 | 22.5 | -34 | NP_954918 | 5' arm 3' arm | ||
| 23608 | + | 52074 | 88 | 21 | -20.6 | NP_954918 | 5' arm 3' arm | ||
| 23605 | + | 51312 | 90 | 24 | -30.9 | NP_954918 | 5' arm 3' arm | ||
| 23613 | + | 55421 | 90 | 22.5 | -28.5 | NP_954919 | 5' arm 3' arm | ||
| 23760 | - | 54530 | 87 | 19.5 | -25.8 | NP_954919 | 5' arm 3' arm | ||
| 23762 | - | 56240 | 89 | 21.5 | -21.1 | NP_954919 | 5' arm 3' arm | ||
| 23614 | + | 56025 | 90 | 20.5 | -26.6 | NP_954919 | 5' arm 3' arm | ||
| 23761 | - | 55713 | 87 | 23.5 | -26.3 | NP_954919 | 5' arm 3' arm | ||
| 23763 | - | 57153 | 90 | 20.5 | -28.8 | NP_954920 | 5' arm 3' arm | ||
| 23616 | + | 57804 | 90 | 23.5 | -26.7 | NP_954920 | 5' arm 3' arm | ||
| 23765 | - | 57726 | 89 | 22.5 | -19.8 | NP_954920 | 5' arm 3' arm | ||
| 23764 | - | 57306 | 90 | 21 | -24.6 | NP_954920 | 5' arm 3' arm | ||
| 23767 | - | 58159 | 90 | 19.5 | -29 | NP_954920 | 5' arm 3' arm | ||
| 23766 | - | 58016 | 90 | 20 | -21.6 | NP_954920 | 5' arm 3' arm | ||
| 23618 | + | 58089 | 89 | 20.5 | -23.6 | NP_954920 | 5' arm 3' arm | ||
| 23617 | + | 57966 | 90 | 20.5 | -21.4 | NP_954920 | 5' arm 3' arm | ||
| 23619 | + | 58710 | 90 | 21.5 | -23.4 | NP_954920 | 5' arm 3' arm | ||
| 23615 | + | 56671 | 88 | 21 | -23.4 | NP_954920 | 5' arm 3' arm | ||
| 23620 | + | 59077 | 89 | 21.5 | -24.1 | NP_954920 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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