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| GenBank Identifier | RefSeq Acc. | Name |
| 41179361 | NC_005357.1 | Bordetella phage BPP-1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 26609 | - | 37885 | 86 | 22 | -24.3 | NP_958711 | 5' arm 3' arm | ||
| 26604 | - | 36731 | 90 | 21.5 | -20.7 | NP_958711 | 5' arm 3' arm | ||
| 26608 | - | 37416 | 80 | 21.5 | -34.1 | NP_958711 | 5' arm 3' arm | ||
| 26605 | - | 36860 | 87 | 22 | -22.6 | NP_958711 | 5' arm 3' arm | ||
| 26606 | - | 37057 | 82 | 23 | -20.7 | NP_958711 | 5' arm 3' arm | ||
| 26607 | - | 37298 | 88 | 23.5 | -20 | NP_958711 | 5' arm 3' arm | ||
| 26610 | - | 37991 | 90 | 20 | -23.7 | NP_958711 | 5' arm 3' arm | ||
| 26533 | + | 38736 | 90 | 19.5 | -25.7 | NP_958712 | 5' arm 3' arm | ||
| 26613 | - | 38816 | 88 | 20.5 | -21 | NP_958712 | 5' arm 3' arm | ||
| 26614 | - | 39056 | 88 | 20.5 | -22.9 | NP_958713 | 5' arm 3' arm | ||
| 26615 | - | 39510 | 90 | 19.5 | -20.7 | NP_958715 | 5' arm 3' arm | ||
| 26534 | + | 39342 | 87 | 20 | -26.8 | NP_958715 | 5' arm 3' arm | ||
| 26616 | - | 39959 | 87 | 21 | -23.4 | NP_958716 | 5' arm 3' arm | ||
| 26618 | - | 40615 | 89 | 21 | -22.2 | NP_958716 | 5' arm 3' arm | ||
| 26619 | - | 40762 | 89 | 21 | -24.9 | NP_958716 | 5' arm 3' arm | ||
| 26535 | + | 40078 | 90 | 23 | -21.7 | NP_958716 | 5' arm 3' arm | ||
| 26537 | + | 40716 | 90 | 19.5 | -29.5 | NP_958716 | 5' arm 3' arm | ||
| 26536 | + | 40367 | 90 | 19.5 | -23.2 | NP_958716 | 5' arm 3' arm | ||
| 26617 | - | 40167 | 90 | 24.5 | -33.4 | NP_958716 | 5' arm 3' arm | ||
| 26622 | - | 42124 | 90 | 19.5 | -27.7 | NP_958719 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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