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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28958 | - | 16635 | 88 | 21.5 | -20.7 | 5' arm 3' arm | |||
| 28957 | - | 16505 | 89 | 21.5 | -24.8 | 5' arm 3' arm | |||
| 28982 | - | 25024 | 89 | 23.5 | -32.61 | 5' arm 3' arm | |||
| 28980 | - | 24301 | 90 | 21 | -25.4 | 5' arm 3' arm | |||
| 28981 | - | 24692 | 90 | 20 | -21.1 | 5' arm 3' arm | |||
| 28970 | - | 21077 | 90 | 24.5 | -24.1 | 5' arm 3' arm | |||
| 28977 | - | 23462 | 90 | 20 | -27 | 5' arm 3' arm | |||
| 28949 | - | 13424 | 89 | 21.5 | -24.8 | 5' arm 3' arm | |||
| 28950 | - | 13554 | 88 | 21.5 | -20.7 | 5' arm 3' arm | |||
| 28724 | + | 684 | 89 | 19 | -20.8 | YP_067938 | 5' arm 3' arm | ||
| 28731 | + | 4212 | 88 | 21 | -23.3 | YP_067940 | 5' arm 3' arm | ||
| 28733 | + | 4703 | 90 | 21.5 | -23.5 | YP_067940 | 5' arm 3' arm | ||
| 28732 | + | 4482 | 87 | 20.5 | -24.1 | YP_067940 | 5' arm 3' arm | ||
| 28725 | + | 1817 | 85 | 19 | -23.6 | YP_067940 | 5' arm 3' arm | ||
| 28726 | + | 2253 | 87 | 19 | -21.11 | YP_067940 | 5' arm 3' arm | ||
| 28728 | + | 2793 | 90 | 19 | -24.3 | YP_067940 | 5' arm 3' arm | ||
| 28729 | + | 3681 | 88 | 19 | -22.4 | YP_067940 | 5' arm 3' arm | ||
| 28730 | + | 3858 | 90 | 19 | -22.2 | YP_067940 | 5' arm 3' arm | ||
| 28727 | + | 2465 | 88 | 21.5 | -25.3 | YP_067940 | 5' arm 3' arm | ||
| 28938 | - | 5817 | 87 | 24.5 | -21.2 | YP_067940 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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