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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28806 | + | 66576 | 87 | 19 | -21.4 | YP_067958 | 5' arm 3' arm | ||
| 28805 | + | 66045 | 83 | 23.5 | -25.91 | YP_067958 | 5' arm 3' arm | ||
| 28802 | + | 64661 | 85 | 21 | -24 | YP_067957 | 5' arm 3' arm | ||
| 28804 | + | 65374 | 90 | 22 | -27.1 | YP_067957 | 5' arm 3' arm | ||
| 28801 | + | 64443 | 85 | 22 | -28.6 | YP_067957 | 5' arm 3' arm | ||
| 28803 | + | 65199 | 90 | 32.5 | -33.7 | YP_067957 | 5' arm 3' arm | ||
| 28800 | + | 63452 | 89 | 19 | -23.9 | YP_067956 | 5' arm 3' arm | ||
| 28799 | + | 61451 | 89 | 21.5 | -25.9 | YP_067955 | 5' arm 3' arm | ||
| 29025 | - | 61614 | 88 | 19 | -26.3 | YP_067955 | 5' arm 3' arm | ||
| 29028 | - | 62340 | 89 | 27 | -28.6 | YP_067955 | 5' arm 3' arm | ||
| 29024 | - | 61433 | 89 | 22 | -19.8 | YP_067955 | 5' arm 3' arm | ||
| 29027 | - | 62035 | 83 | 20 | -22.1 | YP_067955 | 5' arm 3' arm | ||
| 29026 | - | 61841 | 87 | 21.5 | -21.4 | YP_067955 | 5' arm 3' arm | ||
| 29022 | - | 60580 | 88 | 20 | -20.52 | YP_067954 | 5' arm 3' arm | ||
| 29023 | - | 60782 | 73 | 19 | -25 | YP_067954 | 5' arm 3' arm | ||
| 28798 | + | 60949 | 87 | 21.5 | -21.7 | YP_067954 | 5' arm 3' arm | ||
| 28796 | + | 59129 | 87 | 21.5 | -24.3 | YP_067953 | 5' arm 3' arm | ||
| 28795 | + | 58915 | 81 | 19 | -24.9 | YP_067953 | 5' arm 3' arm | ||
| 28797 | + | 59902 | 88 | 19.5 | -22.2 | YP_067953 | 5' arm 3' arm | ||
| 29021 | - | 57390 | 88 | 23 | -34.7 | YP_067952 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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