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| GenBank Identifier | RefSeq Acc. | Name |
| 52139181 | NC_006273.1 | Human herpesvirus 5 (wild type strain Merlin) |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 30209 | - | 198749 | 90 | 20 | -26.9 | YP_081588 | 5' arm 3' arm | ||
| 30210 | - | 198852 | 89 | 20 | -20.4 | YP_081588 | 5' arm 3' arm | ||
| 30207 | - | 198276 | 90 | 21 | -23.2 | YP_081587 | 5' arm 3' arm | ||
| 30208 | - | 198448 | 90 | 21 | -24.3 | YP_081587 | 5' arm 3' arm | ||
| 29950 | + | 196592 | 87 | 21 | -25.1 | YP_081587 | 5' arm 3' arm | ||
| 29949 | + | 196221 | 90 | 21 | -20.2 | YP_081587 | 5' arm 3' arm | ||
| 30200 | - | 193618 | 90 | 19 | -20.6 | YP_081586 | 5' arm 3' arm | ||
| 29946 | + | 193844 | 90 | 25 | -25.7 | YP_081586 | 5' arm 3' arm | ||
| 29945 | + | 192900 | 89 | 23 | -29.7 | YP_081586 | 5' arm 3' arm | ||
| 29944 | + | 192786 | 89 | 21.5 | -22.2 | YP_081586 | 5' arm 3' arm | ||
| 30199 | - | 192518 | 85 | 21.5 | -23.7 | YP_081586 | 5' arm 3' arm | ||
| 29943 | + | 192691 | 89 | 20 | -25.3 | YP_081586 | 5' arm 3' arm | ||
| 29942 | + | 192429 | 86 | 20 | -22 | YP_081586 | 5' arm 3' arm | ||
| 29941 | + | 192172 | 88 | 21 | -24.8 | YP_081585 | 5' arm 3' arm | ||
| 30198 | - | 191421 | 89 | 21.5 | -19.8 | YP_081583 | 5' arm 3' arm | ||
| 30197 | - | 190990 | 90 | 22.5 | -21.2 | YP_081582 | 5' arm 3' arm | ||
| 29940 | + | 190072 | 88 | 24.5 | -25.3 | YP_081581 | 5' arm 3' arm | ||
| 30196 | - | 190750 | 90 | 21.5 | -19.8 | YP_081581 | 5' arm 3' arm | ||
| 30195 | - | 189574 | 87 | 19.5 | -31.1 | YP_081580 | 5' arm 3' arm | ||
| 29939 | + | 189070 | 89 | 19.5 | -20.3 | YP_081580 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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