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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 16203 | - | 197443 | 85 | 23.5 | -23 | YP_214140 | 5' arm 3' arm | ||
| 16202 | - | 197195 | 87 | 21 | -20.5 | YP_214140 | 5' arm 3' arm | ||
| 15902 | + | 197263 | 90 | 20 | -24.5 | YP_214140 | 5' arm 3' arm | ||
| 15900 | + | 196505 | 90 | 21 | -21.7 | YP_214140 | 5' arm 3' arm | ||
| 15896 | + | 194499 | 89 | 20.5 | -22.3 | YP_214139 | 5' arm 3' arm | ||
| 15895 | + | 194289 | 88 | 19 | -19.5 | YP_214139 | 5' arm 3' arm | ||
| 16200 | - | 195730 | 87 | 20 | -23.8 | YP_214139 | 5' arm 3' arm | ||
| 15897 | + | 195002 | 87 | 20 | -23.6 | YP_214139 | 5' arm 3' arm | ||
| 15898 | + | 195433 | 89 | 20.5 | -29.8 | YP_214139 | 5' arm 3' arm | ||
| 16199 | - | 195131 | 90 | 20.5 | -24.3 | YP_214139 | 5' arm 3' arm | ||
| 15893 | + | 192700 | 89 | 20.5 | -21.4 | YP_214138 | 5' arm 3' arm | ||
| 16197 | - | 193622 | 87 | 20.5 | -23 | YP_214138 | 5' arm 3' arm | ||
| 15892 | + | 192520 | 90 | 24 | -25.3 | YP_214138 | 5' arm 3' arm | ||
| 16192 | - | 191592 | 90 | 20 | -19.4 | YP_214137 | 5' arm 3' arm | ||
| 16195 | - | 191967 | 87 | 20 | -22.1 | YP_214137 | 5' arm 3' arm | ||
| 16196 | - | 192099 | 90 | 19.5 | -23.1 | YP_214137 | 5' arm 3' arm | ||
| 16193 | - | 191754 | 90 | 19.5 | -24 | YP_214137 | 5' arm 3' arm | ||
| 16194 | - | 191858 | 90 | 19.5 | -22.1 | YP_214137 | 5' arm 3' arm | ||
| 15891 | + | 191435 | 90 | 20 | -24.2 | YP_214137 | 5' arm 3' arm | ||
| 16190 | - | 190137 | 89 | 21.5 | -21.4 | YP_214135 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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