miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18326 + 56047 87 20 -25.5 NP_817542 5' arm      3' arm
18498 - 56142 90 20 -20.4 NP_817542 5' arm      3' arm
18499 - 56257 89 23 -26.9 NP_817542 5' arm      3' arm
18502 - 57188 86 21.5 -32.4 NP_817542 5' arm      3' arm
18501 - 56889 89 21 -22.7 NP_817542 5' arm      3' arm
18495 - 54702 90 21.5 -21.5 NP_817538 5' arm      3' arm
18325 + 54770 90 20 -23.6 NP_817538 5' arm      3' arm
18497 - 54917 87 23 -20.9 NP_817538 5' arm      3' arm
18494 - 54388 89 21.5 -20.8 NP_817538 5' arm      3' arm
18496 - 54827 86 19 -26.6 NP_817538 5' arm      3' arm
18324 + 54383 87 20.5 -22.3 NP_817538 5' arm      3' arm
18493 - 53881 87 20 -22.5 NP_817537 5' arm      3' arm
18323 + 53873 90 21 -24 NP_817537 5' arm      3' arm
18492 - 53555 88 26 -19.7 NP_817536 5' arm      3' arm
18491 - 52722 90 19 -27.3 NP_817533 5' arm      3' arm
18322 + 52840 80 20.5 -24.6 NP_817533 5' arm      3' arm
18321 + 51608 88 20 -27.3 NP_817531 5' arm      3' arm
18486 - 51396 86 22.5 -25.5 NP_817531 5' arm      3' arm
18489 - 52091 90 21 -23.9 NP_817531 5' arm      3' arm
18490 - 52197 89 21 -21.9 NP_817531 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.