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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10855 | + | 153030 | 87 | 19.5 | -19.9 | NP_116445 | 5' arm 3' arm | ||
| 10853 | + | 151912 | 80 | 19.5 | -22 | NP_116445 | 5' arm 3' arm | ||
| 11109 | - | 150819 | 86 | 21 | -22.4 | NP_116444 | 5' arm 3' arm | ||
| 10851 | + | 150903 | 89 | 19 | -22.5 | NP_116444 | 5' arm 3' arm | ||
| 10848 | + | 147870 | 86 | 23 | -24.2 | NP_116443 | 5' arm 3' arm | ||
| 10847 | + | 147771 | 87 | 20.5 | -36.3 | NP_116443 | 5' arm 3' arm | ||
| 11107 | - | 147125 | 86 | 21 | -23.8 | NP_116442 | 5' arm 3' arm | ||
| 11106 | - | 146792 | 90 | 19.5 | -21.4 | NP_116442 | 5' arm 3' arm | ||
| 10846 | + | 147053 | 89 | 22.5 | -23.8 | NP_116442 | 5' arm 3' arm | ||
| 10845 | + | 145365 | 87 | 20 | -24.8 | NP_116441 | 5' arm 3' arm | ||
| 11105 | - | 145777 | 87 | 20.5 | -25.2 | NP_116441 | 5' arm 3' arm | ||
| 10844 | + | 145277 | 87 | 20.5 | -20.6 | NP_116441 | 5' arm 3' arm | ||
| 10843 | + | 144784 | 90 | 24.5 | -19.9 | NP_116440 | 5' arm 3' arm | ||
| 11103 | - | 143701 | 89 | 19 | -22.6 | NP_116438 | 5' arm 3' arm | ||
| 10849 | + | 148586 | 83 | 20.5 | -20.3 | NP_116438 | 5' arm 3' arm | ||
| 10841 | + | 143948 | 90 | 19 | -20 | NP_116438 | 5' arm 3' arm | ||
| 11102 | - | 143155 | 89 | 20 | -21.6 | NP_116437 | 5' arm 3' arm | ||
| 11101 | - | 142190 | 88 | 21 | -24.9 | NP_116437 | 5' arm 3' arm | ||
| 10840 | + | 142298 | 90 | 22.5 | -24.5 | NP_116437 | 5' arm 3' arm | ||
| 11100 | - | 141082 | 90 | 25.5 | -23.5 | NP_116436 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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