miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38707890 NC_005284.1 Bacteriophage phi1026b

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
24936 - 24627 89 20 -24.9 NP_945059 5' arm      3' arm
24852 + 23900 87 20.5 -25.82 NP_945058 5' arm      3' arm
24933 - 23294 89 20 -25.1 NP_945058 5' arm      3' arm
24934 - 23843 90 22 -19.6 NP_945058 5' arm      3' arm
24851 + 23607 87 22 -26.3 NP_945058 5' arm      3' arm
24850 + 23195 89 21 -23.1 NP_945058 5' arm      3' arm
24931 - 21626 90 23 -29.5 NP_945055 5' arm      3' arm
24849 + 21151 90 19.5 -27.2 NP_945054 5' arm      3' arm
24930 - 21357 90 19 -27.9 NP_945054 5' arm      3' arm
24848 + 20827 89 20 -20.5 NP_945053 5' arm      3' arm
24847 + 19796 88 20 -29.8 NP_945051 5' arm      3' arm
24843 + 16928 87 19.5 -22.4 NP_945050 5' arm      3' arm
24846 + 19374 86 22 -22.8 NP_945050 5' arm      3' arm
24842 + 16820 90 21.5 -21.7 NP_945050 5' arm      3' arm
24845 + 18125 89 19 -20.2 NP_945050 5' arm      3' arm
24928 - 18753 89 21.5 -25 NP_945050 5' arm      3' arm
24929 - 19318 90 19.5 -26.3 NP_945050 5' arm      3' arm
24927 - 18312 90 25.5 -22.8 NP_945050 5' arm      3' arm
24924 - 16670 90 23.5 -20.4 NP_945050 5' arm      3' arm
24844 + 17849 90 19.5 -21.6 NP_945050 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.