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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23806 | - | 88994 | 90 | 19.5 | -21.2 | NP_954939 | 5' arm 3' arm | ||
| 23804 | - | 87979 | 89 | 19 | -29.5 | NP_954939 | 5' arm 3' arm | ||
| 23803 | - | 86081 | 90 | 23.5 | -28.5 | NP_954937 | 5' arm 3' arm | ||
| 23802 | - | 85934 | 87 | 20.5 | -26.5 | NP_954937 | 5' arm 3' arm | ||
| 23799 | - | 84469 | 89 | 19.5 | -24.5 | NP_954936 | 5' arm 3' arm | ||
| 23801 | - | 85839 | 90 | 20 | -22.3 | NP_954936 | 5' arm 3' arm | ||
| 23800 | - | 84844 | 89 | 22.5 | -26.8 | NP_954936 | 5' arm 3' arm | ||
| 23643 | + | 83169 | 90 | 21.5 | -25.8 | NP_954935 | 5' arm 3' arm | ||
| 23798 | - | 83812 | 89 | 21 | -21.2 | NP_954935 | 5' arm 3' arm | ||
| 23645 | + | 83695 | 87 | 20 | -25.2 | NP_954935 | 5' arm 3' arm | ||
| 23646 | + | 83991 | 90 | 22.5 | -24.2 | NP_954935 | 5' arm 3' arm | ||
| 23644 | + | 83352 | 88 | 21.5 | -24.6 | NP_954935 | 5' arm 3' arm | ||
| 23642 | + | 82663 | 87 | 20.5 | -23.8 | NP_954934 | 5' arm 3' arm | ||
| 23797 | - | 82659 | 87 | 20 | -28.5 | NP_954934 | 5' arm 3' arm | ||
| 23796 | - | 82553 | 87 | 19 | -30.4 | NP_954934 | 5' arm 3' arm | ||
| 23641 | + | 82386 | 90 | 23.5 | -30.5 | NP_954934 | 5' arm 3' arm | ||
| 23791 | - | 80798 | 90 | 21.5 | -30.1 | NP_954933 | 5' arm 3' arm | ||
| 23638 | + | 80709 | 90 | 23.5 | -30.8 | NP_954933 | 5' arm 3' arm | ||
| 23637 | + | 80148 | 86 | 21 | -23.4 | NP_954933 | 5' arm 3' arm | ||
| 23790 | - | 78477 | 89 | 20.5 | -26 | NP_954932 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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