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| GenBank Identifier | RefSeq Acc. | Name |
| 38638196 | NC_005264.1 | Psittacid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 24488 | + | 118170 | 88 | 21.5 | -27.4 | NP_944440 | 5' arm 3' arm | ||
| 24689 | - | 118398 | 89 | 20 | -20.6 | NP_944440 | 5' arm 3' arm | ||
| 24487 | + | 117074 | 90 | 21 | -33.5 | NP_944439 | 5' arm 3' arm | ||
| 24686 | - | 117075 | 85 | 20.5 | -19.7 | NP_944439 | 5' arm 3' arm | ||
| 24485 | + | 116228 | 90 | 22.5 | -21.6 | NP_944438 | 5' arm 3' arm | ||
| 24484 | + | 115707 | 87 | 20 | -25.6 | NP_944438 | 5' arm 3' arm | ||
| 24486 | + | 116358 | 86 | 20 | -19.4 | NP_944438 | 5' arm 3' arm | ||
| 24483 | + | 115090 | 79 | 19.5 | -23.72 | NP_944437 | 5' arm 3' arm | ||
| 24683 | - | 115182 | 85 | 19 | -25.3 | NP_944437 | 5' arm 3' arm | ||
| 24684 | - | 115440 | 89 | 20 | -24.4 | NP_944437 | 5' arm 3' arm | ||
| 24481 | + | 113975 | 88 | 20 | -20.2 | NP_944436 | 5' arm 3' arm | ||
| 24480 | + | 113807 | 89 | 20.5 | -31 | NP_944436 | 5' arm 3' arm | ||
| 24680 | - | 113550 | 89 | 22 | -26 | NP_944435 | 5' arm 3' arm | ||
| 24679 | - | 112710 | 88 | 20.5 | -30.6 | NP_944435 | 5' arm 3' arm | ||
| 24477 | + | 111955 | 86 | 19 | -24.6 | NP_944435 | 5' arm 3' arm | ||
| 24478 | + | 113147 | 90 | 19.5 | -20.5 | NP_944435 | 5' arm 3' arm | ||
| 24678 | - | 110453 | 90 | 20.5 | -24.3 | NP_944434 | 5' arm 3' arm | ||
| 24677 | - | 109759 | 88 | 20 | -22.1 | NP_944434 | 5' arm 3' arm | ||
| 24476 | + | 110856 | 88 | 22 | -21.4 | NP_944434 | 5' arm 3' arm | ||
| 24475 | + | 108540 | 90 | 24 | -25.8 | NP_944434 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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