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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 16173 | - | 171939 | 90 | 22 | -24.4 | YP_214114 | 5' arm 3' arm | ||
| 16172 | - | 170923 | 89 | 23 | -29.5 | YP_214113 | 5' arm 3' arm | ||
| 16171 | - | 170656 | 89 | 22 | -26 | YP_214113 | 5' arm 3' arm | ||
| 16170 | - | 170529 | 88 | 20.5 | -21.1 | YP_214112 | 5' arm 3' arm | ||
| 15876 | + | 169987 | 87 | 23.5 | -22.8 | YP_214112 | 5' arm 3' arm | ||
| 16169 | - | 167901 | 84 | 19 | -26.4 | YP_214111 | 5' arm 3' arm | ||
| 15873 | + | 167342 | 89 | 21.5 | -26.8 | YP_214111 | 5' arm 3' arm | ||
| 16168 | - | 167430 | 89 | 20 | -26.2 | YP_214111 | 5' arm 3' arm | ||
| 15874 | + | 168871 | 90 | 20.5 | -23.8 | YP_214111 | 5' arm 3' arm | ||
| 15875 | + | 168988 | 88 | 23 | -22.7 | YP_214111 | 5' arm 3' arm | ||
| 15872 | + | 166794 | 87 | 20.5 | -20.3 | YP_214110 | 5' arm 3' arm | ||
| 15871 | + | 165961 | 90 | 19 | -23 | YP_214109 | 5' arm 3' arm | ||
| 15870 | + | 165662 | 88 | 23 | -20.1 | YP_214109 | 5' arm 3' arm | ||
| 15865 | + | 162062 | 86 | 25.5 | -34.6 | YP_214107 | 5' arm 3' arm | ||
| 16161 | - | 162147 | 90 | 25 | -34.6 | YP_214107 | 5' arm 3' arm | ||
| 16163 | - | 162555 | 90 | 20 | -22.8 | YP_214107 | 5' arm 3' arm | ||
| 16162 | - | 162297 | 89 | 23 | -22.1 | YP_214107 | 5' arm 3' arm | ||
| 15862 | + | 154245 | 90 | 23 | -28.2 | YP_214106 | 5' arm 3' arm | ||
| 16159 | - | 153544 | 90 | 19 | -20 | YP_214105 | 5' arm 3' arm | ||
| 15861 | + | 152049 | 90 | 19 | -19.9 | YP_214105 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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