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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 11095 | - | 139332 | 88 | 20.5 | -25.5 | NP_116436 | 5' arm 3' arm | ||
| 11097 | - | 140021 | 87 | 20 | -27.5 | NP_116436 | 5' arm 3' arm | ||
| 11099 | - | 140864 | 89 | 21.5 | -19.8 | NP_116436 | 5' arm 3' arm | ||
| 11100 | - | 141082 | 90 | 25.5 | -23.5 | NP_116436 | 5' arm 3' arm | ||
| 11096 | - | 139440 | 84 | 19 | -22.9 | NP_116436 | 5' arm 3' arm | ||
| 10839 | + | 141471 | 89 | 22.5 | -22.8 | NP_116436 | 5' arm 3' arm | ||
| 10838 | + | 139244 | 88 | 20.5 | -23.59 | NP_116436 | 5' arm 3' arm | ||
| 10827 | + | 135274 | 88 | 23.5 | -23.7 | NP_116435 | 5' arm 3' arm | ||
| 11094 | - | 138406 | 90 | 20 | -32.8 | NP_116435 | 5' arm 3' arm | ||
| 10834 | + | 138359 | 90 | 20 | -25.9 | NP_116435 | 5' arm 3' arm | ||
| 10829 | + | 135620 | 90 | 20 | -28.01 | NP_116435 | 5' arm 3' arm | ||
| 10837 | + | 138877 | 90 | 19 | -26 | NP_116435 | 5' arm 3' arm | ||
| 10833 | + | 137859 | 90 | 21.5 | -24.9 | NP_116435 | 5' arm 3' arm | ||
| 10830 | + | 135886 | 90 | 22.5 | -20 | NP_116435 | 5' arm 3' arm | ||
| 10836 | + | 138744 | 90 | 27 | -24.3 | NP_116435 | 5' arm 3' arm | ||
| 10832 | + | 136640 | 89 | 21 | -21.1 | NP_116435 | 5' arm 3' arm | ||
| 10835 | + | 138581 | 86 | 22.5 | -32.1 | NP_116435 | 5' arm 3' arm | ||
| 10831 | + | 136419 | 89 | 25 | -25.8 | NP_116435 | 5' arm 3' arm | ||
| 10828 | + | 135373 | 89 | 21 | -21.91 | NP_116435 | 5' arm 3' arm | ||
| 10826 | + | 134696 | 89 | 20.5 | -23.9 | NP_116434 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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