miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
57659681 NC_006659.1 Cotesia congregata virus segment Circle32

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31509 + 34142 90 26.5 -25.5 5' arm      3' arm
31512 + 10560 81 25 -30.4 5' arm      3' arm
31513 + 14621 90 21 -20.9 5' arm      3' arm
31519 + 6728 86 27 -29.2 5' arm      3' arm
31518 + 5190 87 24.5 -24.3 5' arm      3' arm
31520 + 10946 88 20.5 -28.1 5' arm      3' arm
31496 + 1350 90 28 -23.3 5' arm      3' arm
31493 + 10556 89 24.5 -27.6 5' arm      3' arm
31441 + 3599 79 22 -24.4 5' arm      3' arm
31444 + 5339 90 35.5 -28.5 5' arm      3' arm
31442 + 5156 89 34.5 -33.1 5' arm      3' arm
31443 + 5247 90 32.5 -22.2 5' arm      3' arm
31445 + 16367 89 23.5 -29 5' arm      3' arm
31476 + 1410 89 27 -27.5 5' arm      3' arm
31477 + 4066 89 24 -32.5 5' arm      3' arm
31479 + 6458 90 24.5 -20.62 5' arm      3' arm
31478 + 5212 85 21 -29.9 5' arm      3' arm
31480 + 20573 90 23 -33.3 5' arm      3' arm
31484 + 667 82 20 -31 5' arm      3' arm
31491 + 3923 90 23.5 -32.5 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.