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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29084 | - | 111725 | 85 | 24 | -25.4 | YP_067987 | 5' arm 3' arm | ||
| 29083 | - | 111639 | 88 | 20.5 | -29.7 | YP_067987 | 5' arm 3' arm | ||
| 29076 | - | 106185 | 84 | 19.5 | -21.5 | YP_067986 | 5' arm 3' arm | ||
| 28840 | + | 106440 | 90 | 20.5 | -21.5 | YP_067986 | 5' arm 3' arm | ||
| 28839 | + | 105866 | 89 | 21.5 | -21.9 | YP_067986 | 5' arm 3' arm | ||
| 29075 | - | 106042 | 89 | 20 | -26.7 | YP_067986 | 5' arm 3' arm | ||
| 29074 | - | 105911 | 90 | 19 | -23.3 | YP_067986 | 5' arm 3' arm | ||
| 29077 | - | 106499 | 89 | 19 | -19.8 | YP_067986 | 5' arm 3' arm | ||
| 29072 | - | 104388 | 90 | 19.5 | -24.9 | YP_067985 | 5' arm 3' arm | ||
| 29073 | - | 104530 | 88 | 20.5 | -19.6 | YP_067985 | 5' arm 3' arm | ||
| 28837 | + | 104725 | 90 | 19 | -20.6 | YP_067985 | 5' arm 3' arm | ||
| 28838 | + | 105080 | 88 | 20 | -28.1 | YP_067985 | 5' arm 3' arm | ||
| 28836 | + | 102536 | 90 | 20 | -29 | YP_067984 | 5' arm 3' arm | ||
| 28834 | + | 101302 | 89 | 23 | -21 | YP_067982 | 5' arm 3' arm | ||
| 28833 | + | 100941 | 88 | 23 | -28 | YP_067982 | 5' arm 3' arm | ||
| 29070 | - | 101279 | 89 | 19 | -22 | YP_067982 | 5' arm 3' arm | ||
| 29071 | - | 101768 | 90 | 21 | -25.2 | YP_067982 | 5' arm 3' arm | ||
| 28835 | + | 101668 | 85 | 20 | -21.2 | YP_067982 | 5' arm 3' arm | ||
| 29068 | - | 100054 | 88 | 20 | -25.2 | YP_067981 | 5' arm 3' arm | ||
| 29067 | - | 99852 | 90 | 21 | -19.4 | YP_067981 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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