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| GenBank Identifier | RefSeq Acc. | Name |
| 38638196 | NC_005264.1 | Psittacid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 24476 | + | 110856 | 88 | 22 | -21.4 | NP_944434 | 5' arm 3' arm | ||
| 24474 | + | 107872 | 86 | 19.5 | -26.2 | NP_944433 | 5' arm 3' arm | ||
| 24675 | - | 108307 | 89 | 25 | -23.4 | NP_944433 | 5' arm 3' arm | ||
| 24673 | - | 106278 | 83 | 19 | -23.6 | NP_944432 | 5' arm 3' arm | ||
| 24674 | - | 106851 | 90 | 20.5 | -21 | NP_944432 | 5' arm 3' arm | ||
| 24672 | - | 106155 | 90 | 23.5 | -29.9 | NP_944432 | 5' arm 3' arm | ||
| 24473 | + | 106819 | 90 | 19 | -22.7 | NP_944432 | 5' arm 3' arm | ||
| 24671 | - | 105869 | 90 | 21 | -22.7 | NP_944432 | 5' arm 3' arm | ||
| 24468 | + | 103055 | 85 | 21 | -22.8 | NP_944431 | 5' arm 3' arm | ||
| 24666 | - | 103010 | 89 | 20 | -22.2 | NP_944431 | 5' arm 3' arm | ||
| 24469 | + | 103412 | 89 | 19 | -21.6 | NP_944431 | 5' arm 3' arm | ||
| 24471 | + | 103905 | 90 | 21.5 | -21.8 | NP_944431 | 5' arm 3' arm | ||
| 24667 | - | 103251 | 90 | 20.5 | -24 | NP_944431 | 5' arm 3' arm | ||
| 24470 | + | 103546 | 85 | 19 | -23.7 | NP_944431 | 5' arm 3' arm | ||
| 24665 | - | 101870 | 87 | 22 | -21.7 | NP_944430 | 5' arm 3' arm | ||
| 24663 | - | 101340 | 88 | 19 | -21 | NP_944430 | 5' arm 3' arm | ||
| 24664 | - | 101502 | 89 | 21.5 | -20.7 | NP_944430 | 5' arm 3' arm | ||
| 24467 | + | 102001 | 87 | 19.5 | -24.5 | NP_944430 | 5' arm 3' arm | ||
| 24662 | - | 100077 | 81 | 19 | -21.4 | NP_944428 | 5' arm 3' arm | ||
| 24466 | + | 97500 | 75 | 19 | -22.9 | NP_944427 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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