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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10826 | + | 134696 | 89 | 20.5 | -23.9 | NP_116434 | 5' arm 3' arm | ||
| 10825 | + | 134417 | 90 | 21 | -20.6 | NP_116434 | 5' arm 3' arm | ||
| 10823 | + | 132797 | 89 | 19 | -24.6 | NP_116433 | 5' arm 3' arm | ||
| 10820 | + | 131659 | 90 | 24 | -26.3 | NP_116432 | 5' arm 3' arm | ||
| 11092 | - | 132032 | 90 | 19.5 | -28.4 | NP_116432 | 5' arm 3' arm | ||
| 10817 | + | 130821 | 89 | 24.5 | -20.7 | NP_116432 | 5' arm 3' arm | ||
| 10815 | + | 130453 | 87 | 21 | -33.5 | NP_116432 | 5' arm 3' arm | ||
| 10818 | + | 131193 | 87 | 19.5 | -25.7 | NP_116432 | 5' arm 3' arm | ||
| 10816 | + | 130660 | 85 | 20 | -24.5 | NP_116432 | 5' arm 3' arm | ||
| 10819 | + | 131284 | 88 | 20.5 | -23.4 | NP_116432 | 5' arm 3' arm | ||
| 10822 | + | 132079 | 88 | 22 | -22.2 | NP_116432 | 5' arm 3' arm | ||
| 11091 | - | 130715 | 90 | 20.5 | -23.2 | NP_116432 | 5' arm 3' arm | ||
| 10821 | + | 131944 | 90 | 27 | -27.2 | NP_116432 | 5' arm 3' arm | ||
| 10814 | + | 130010 | 88 | 21 | -30.2 | NP_116431 | 5' arm 3' arm | ||
| 11090 | - | 129777 | 86 | 20.5 | -25 | NP_116431 | 5' arm 3' arm | ||
| 10813 | + | 129769 | 90 | 20 | -22.4 | NP_116431 | 5' arm 3' arm | ||
| 11089 | - | 128769 | 84 | 20.5 | -22.8 | NP_116431 | 5' arm 3' arm | ||
| 11088 | - | 128638 | 89 | 21 | -26.7 | NP_116431 | 5' arm 3' arm | ||
| 10812 | + | 128484 | 89 | 21 | -21.4 | NP_116431 | 5' arm 3' arm | ||
| 10811 | + | 127411 | 90 | 19.5 | -30.4 | NP_116430 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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