miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9635581 NC_002484.1 Pseudomonas phage D3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8880 - 3082 85 21.5 -22.9 NP_061500 5' arm      3' arm
8795 + 3055 89 24 -20.6 NP_061500 5' arm      3' arm
8794 + 2557 86 21 -21.5 NP_061500 5' arm      3' arm
8793 + 2442 90 21.5 -20.3 NP_061500 5' arm      3' arm
8879 - 2645 90 20 -28.7 NP_061500 5' arm      3' arm
8792 + 2185 90 22 -19.4 NP_061499 5' arm      3' arm
8877 - 1424 90 24 -22.9 NP_061498 5' arm      3' arm
8790 + 1128 89 21.5 -21.3 NP_061498 5' arm      3' arm
8789 + 799 90 22 -21.4 NP_061498 5' arm      3' arm
8791 + 1438 87 19 -21.9 NP_061498 5' arm      3' arm
8788 + 427 78 20.5 -22.1 NP_061498 5' arm      3' arm
8876 - 129 90 21 -23.7 NP_061497 5' arm      3' arm
8923 - 43979 90 22.5 -21.6 5' arm      
8916 - 37649 89 19 -22.77 5' arm      3' arm
8871 + 53327 88 20.5 -24.1 5' arm      3' arm
8836 + 28452 89 27.5 -35.9 5' arm      3' arm
8873 + 54177 89 19.5 -22.4 5' arm      3' arm
8934 - 53533 84 22.5 -27.9 5' arm      3' arm
8844 + 32449 78 21 -21.7 5' arm      3' arm
8840 + 30677 89 21 -31.01 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.