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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23785 | - | 74080 | 89 | 20 | -24.4 | NP_954929 | 5' arm 3' arm | ||
| 23633 | + | 73119 | 87 | 19 | -25.4 | NP_954929 | 5' arm 3' arm | ||
| 23781 | - | 71419 | 90 | 20 | -29.8 | NP_954929 | 5' arm 3' arm | ||
| 23784 | - | 72993 | 87 | 19 | -24.6 | NP_954929 | 5' arm 3' arm | ||
| 23627 | + | 70600 | 90 | 23.5 | -28.9 | NP_954928 | 5' arm 3' arm | ||
| 23777 | - | 68679 | 89 | 19 | -24.6 | NP_954927 | 5' arm 3' arm | ||
| 23779 | - | 69882 | 90 | 19 | -21.9 | NP_954927 | 5' arm 3' arm | ||
| 23778 | - | 69278 | 89 | 19.5 | -21.8 | NP_954927 | 5' arm 3' arm | ||
| 23626 | + | 69360 | 88 | 20 | -21.6 | NP_954927 | |||
| 23780 | - | 70291 | 90 | 24 | -30.4 | NP_954927 | 5' arm 3' arm | ||
| 23774 | - | 66830 | 89 | 22.5 | -22.4 | NP_954926 | 5' arm 3' arm | ||
| 23773 | - | 66652 | 90 | 19 | -25.3 | NP_954926 | 5' arm 3' arm | ||
| 23775 | - | 68123 | 89 | 19.5 | -26.2 | NP_954926 | 5' arm 3' arm | ||
| 23625 | + | 65200 | 88 | 23 | -33.2 | NP_954925 | 5' arm 3' arm | ||
| 23772 | - | 64502 | 88 | 21.5 | -25.3 | NP_954924 | 5' arm 3' arm | ||
| 23624 | + | 62336 | 87 | 20 | -23.3 | NP_954923 | 5' arm 3' arm | ||
| 23770 | - | 63064 | 90 | 21 | -25.7 | NP_954923 | 5' arm 3' arm | ||
| 23771 | - | 63778 | 88 | 21.5 | -27.2 | NP_954923 | 5' arm 3' arm | ||
| 23769 | - | 60935 | 90 | 19 | -23.6 | NP_954922 | 5' arm 3' arm | ||
| 23623 | + | 61564 | 90 | 19.5 | -29.1 | NP_954921 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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