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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29069 | - | 100320 | 90 | 22 | -26.8 | YP_067981 | 5' arm 3' arm | ||
| 29068 | - | 100054 | 88 | 20 | -25.2 | YP_067981 | 5' arm 3' arm | ||
| 29064 | - | 97490 | 90 | 20 | -31 | YP_067979 | 5' arm 3' arm | ||
| 29062 | - | 97062 | 89 | 20 | -22.6 | YP_067978 | 5' arm 3' arm | ||
| 29061 | - | 96831 | 89 | 20 | -19.4 | YP_067978 | 5' arm 3' arm | ||
| 29063 | - | 97375 | 90 | 20.5 | -19.5 | YP_067978 | 5' arm 3' arm | ||
| 29059 | - | 96065 | 89 | 20 | -19.5 | YP_067978 | 5' arm 3' arm | ||
| 29060 | - | 96533 | 86 | 25 | -27 | YP_067978 | 5' arm 3' arm | ||
| 29058 | - | 95765 | 89 | 21 | -28.9 | YP_067977 | 5' arm 3' arm | ||
| 28825 | + | 93351 | 90 | 19.5 | -23.1 | YP_067977 | 5' arm 3' arm | ||
| 28830 | + | 95337 | 90 | 20 | -21.21 | YP_067977 | 5' arm 3' arm | ||
| 28828 | + | 94429 | 86 | 22.5 | -24.6 | YP_067977 | 5' arm 3' arm | ||
| 29057 | - | 95575 | 86 | 19 | -24.1 | YP_067977 | 5' arm 3' arm | ||
| 28826 | + | 93520 | 90 | 20.5 | -25 | YP_067977 | 5' arm 3' arm | ||
| 29055 | - | 93528 | 90 | 21 | -21.1 | YP_067977 | 5' arm 3' arm | ||
| 28829 | + | 94943 | 90 | 19.5 | -19.5 | YP_067977 | 5' arm 3' arm | ||
| 29056 | - | 93767 | 85 | 19 | -21.5 | YP_067977 | 5' arm 3' arm | ||
| 28827 | + | 93693 | 90 | 21.5 | -20.1 | YP_067977 | 5' arm 3' arm | ||
| 28831 | + | 95437 | 87 | 20 | -22.5 | YP_067977 | 5' arm 3' arm | ||
| 29053 | - | 92936 | 87 | 20 | -28.41 | YP_067976 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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