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| GenBank Identifier | RefSeq Acc. | Name |
| 38638196 | NC_005264.1 | Psittacid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 24660 | - | 98150 | 89 | 20 | -25.6 | NP_944427 | 5' arm 3' arm | ||
| 24661 | - | 98547 | 87 | 19.5 | -23.5 | NP_944427 | 5' arm 3' arm | ||
| 24659 | - | 97747 | 86 | 23 | -20 | NP_944427 | 5' arm 3' arm | ||
| 24465 | + | 96804 | 90 | 19.5 | -21.8 | NP_944425 | 5' arm 3' arm | ||
| 24464 | + | 96191 | 90 | 20 | -27.2 | NP_944425 | 5' arm 3' arm | ||
| 24463 | + | 95458 | 88 | 20 | -23.5 | NP_944424 | 5' arm 3' arm | ||
| 24657 | - | 95353 | 88 | 21.5 | -23.7 | NP_944424 | 5' arm 3' arm | ||
| 24658 | - | 95531 | 87 | 19.5 | -19.4 | NP_944424 | 5' arm 3' arm | ||
| 24461 | + | 94811 | 87 | 21.5 | -19.4 | NP_944424 | 5' arm 3' arm | ||
| 24462 | + | 95245 | 87 | 19 | -28.9 | NP_944424 | 5' arm 3' arm | ||
| 24652 | - | 93299 | 90 | 22 | -22.8 | NP_944423 | 5' arm 3' arm | ||
| 24653 | - | 93457 | 89 | 20 | -25.5 | NP_944423 | 5' arm 3' arm | ||
| 24651 | - | 92784 | 90 | 19.5 | -20.6 | NP_944423 | 5' arm 3' arm | ||
| 24656 | - | 93942 | 88 | 23 | -25.3 | NP_944423 | 5' arm 3' arm | ||
| 24654 | - | 93729 | 90 | 22.5 | -31.5 | NP_944423 | 5' arm 3' arm | ||
| 24655 | - | 93829 | 89 | 20.5 | -20.5 | NP_944423 | 5' arm 3' arm | ||
| 24458 | + | 93083 | 89 | 21.5 | -19.5 | NP_944423 | 5' arm 3' arm | ||
| 24459 | + | 93528 | 89 | 20.5 | -19.9 | NP_944423 | 5' arm 3' arm | ||
| 24457 | + | 92551 | 90 | 20 | -25.1 | NP_944423 | 5' arm 3' arm | ||
| 24460 | + | 94461 | 90 | 19.5 | -25.7 | NP_944423 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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