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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29053 | - | 92936 | 87 | 20 | -28.41 | YP_067976 | 5' arm 3' arm | ||
| 29054 | - | 93095 | 90 | 22.5 | -24.3 | YP_067976 | 5' arm 3' arm | ||
| 29050 | - | 92133 | 90 | 21 | -21 | YP_067975 | 5' arm 3' arm | ||
| 29051 | - | 92528 | 89 | 19 | -23.6 | YP_067975 | 5' arm 3' arm | ||
| 28824 | + | 91164 | 89 | 20 | -22.5 | YP_067973 | 5' arm 3' arm | ||
| 28823 | + | 89446 | 86 | 22.5 | -36.4 | YP_067972 | 5' arm 3' arm | ||
| 28822 | + | 88621 | 87 | 20.5 | -21.2 | YP_067972 | 5' arm 3' arm | ||
| 28821 | + | 88390 | 88 | 19.5 | -21.4 | YP_067972 | 5' arm 3' arm | ||
| 29049 | - | 87931 | 90 | 19.5 | -25.2 | YP_067971 | 5' arm 3' arm | ||
| 28820 | + | 87841 | 88 | 22.5 | -22.7 | YP_067971 | 5' arm 3' arm | ||
| 29048 | - | 87320 | 89 | 25 | -27.2 | YP_067971 | 5' arm 3' arm | ||
| 29046 | - | 85938 | 88 | 23 | -21.5 | YP_067970 | 5' arm 3' arm | ||
| 29047 | - | 86691 | 90 | 21 | -31.1 | YP_067970 | 5' arm 3' arm | ||
| 28819 | + | 86688 | 86 | 20.5 | -19.7 | YP_067970 | 5' arm 3' arm | ||
| 28818 | + | 86321 | 90 | 20.5 | -24.1 | YP_067970 | 5' arm 3' arm | ||
| 28817 | + | 83747 | 89 | 20 | -28.5 | YP_067968 | 5' arm 3' arm | ||
| 29044 | - | 83866 | 90 | 22 | -22 | YP_067968 | 5' arm 3' arm | ||
| 29039 | - | 80941 | 86 | 22.5 | -20.6 | YP_067967 | 5' arm 3' arm | ||
| 29043 | - | 82475 | 89 | 25 | -21.9 | YP_067967 | 5' arm 3' arm | ||
| 29041 | - | 82036 | 90 | 22 | -21.8 | YP_067967 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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