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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29042 | - | 82189 | 84 | 20.5 | -30.5 | YP_067967 | 5' arm 3' arm | ||
| 29043 | - | 82475 | 89 | 25 | -21.9 | YP_067967 | 5' arm 3' arm | ||
| 29039 | - | 80941 | 86 | 22.5 | -20.6 | YP_067967 | 5' arm 3' arm | ||
| 29035 | - | 78524 | 86 | 19 | -22.6 | YP_067966 | 5' arm 3' arm | ||
| 29036 | - | 78615 | 89 | 22.5 | -24.3 | YP_067966 | 5' arm 3' arm | ||
| 29037 | - | 79348 | 89 | 22.5 | -28.51 | YP_067966 | 5' arm 3' arm | ||
| 29034 | - | 74317 | 90 | 22 | -24.23 | YP_067965 | 5' arm 3' arm | ||
| 28816 | + | 75093 | 90 | 25 | -26.2 | YP_067965 | 5' arm 3' arm | ||
| 28815 | + | 74226 | 89 | 20 | -20 | YP_067965 | 5' arm 3' arm | ||
| 28813 | + | 73553 | 90 | 22.5 | -20.4 | YP_067965 | 5' arm 3' arm | ||
| 28812 | + | 71835 | 90 | 20 | -20.4 | YP_067963 | 5' arm 3' arm | ||
| 28811 | + | 70756 | 87 | 20 | -19.4 | YP_067962 | 5' arm 3' arm | ||
| 28810 | + | 70195 | 79 | 19.5 | -28.8 | YP_067961 | 5' arm 3' arm | ||
| 28809 | + | 69348 | 88 | 20 | -22 | YP_067960 | 5' arm 3' arm | ||
| 29031 | - | 69374 | 88 | 19 | -21.1 | YP_067960 | 5' arm 3' arm | ||
| 29032 | - | 69606 | 88 | 19 | -21 | YP_067960 | 5' arm 3' arm | ||
| 28808 | + | 68957 | 88 | 19.5 | -26.7 | YP_067959 | 5' arm 3' arm | ||
| 28807 | + | 68761 | 89 | 19.5 | -24.6 | YP_067959 | 5' arm 3' arm | ||
| 28805 | + | 66045 | 83 | 23.5 | -25.91 | YP_067958 | 5' arm 3' arm | ||
| 28806 | + | 66576 | 87 | 19 | -21.4 | YP_067958 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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