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| GenBank Identifier | RefSeq Acc. | Name |
| 38638196 | NC_005264.1 | Psittacid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 24636 | - | 85985 | 90 | 19 | -21.7 | NP_944420 | 5' arm 3' arm | ||
| 24451 | + | 88148 | 90 | 21.5 | -22.8 | NP_944420 | 5' arm 3' arm | ||
| 24449 | + | 87193 | 89 | 19.5 | -21 | NP_944420 | 5' arm 3' arm | ||
| 24452 | + | 88633 | 89 | 19 | -22.2 | NP_944420 | 5' arm 3' arm | ||
| 24450 | + | 87575 | 90 | 19.5 | -25.3 | NP_944420 | 5' arm 3' arm | ||
| 24448 | + | 85394 | 88 | 20.5 | -21.3 | NP_944420 | 5' arm 3' arm | ||
| 24446 | + | 84213 | 88 | 22.5 | -21.7 | NP_944419 | 5' arm 3' arm | ||
| 24447 | + | 84397 | 90 | 23 | -20.1 | NP_944419 | 5' arm 3' arm | ||
| 24444 | + | 82747 | 90 | 20 | -20.9 | NP_944418 | 5' arm 3' arm | ||
| 24633 | - | 83577 | 88 | 20 | -27.6 | NP_944418 | 5' arm 3' arm | ||
| 24445 | + | 82895 | 89 | 20 | -26.5 | NP_944418 | 5' arm 3' arm | ||
| 24443 | + | 82379 | 85 | 23 | -24.5 | NP_944418 | 5' arm 3' arm | ||
| 24632 | - | 82733 | 88 | 22.5 | -29.9 | NP_944418 | 5' arm 3' arm | ||
| 24631 | - | 82387 | 90 | 21 | -22.1 | NP_944418 | 5' arm 3' arm | ||
| 24630 | - | 80918 | 85 | 20.5 | -23.6 | NP_944417 | 5' arm 3' arm | ||
| 24442 | + | 78577 | 90 | 21 | -25 | NP_944416 | 5' arm 3' arm | ||
| 24441 | + | 78468 | 90 | 20.5 | -20.1 | NP_944416 | 5' arm 3' arm | ||
| 24626 | - | 77205 | 89 | 21 | -23.7 | NP_944415 | 5' arm 3' arm | ||
| 24440 | + | 77544 | 89 | 20 | -28.1 | NP_944415 | 5' arm 3' arm | ||
| 24627 | - | 78045 | 85 | 22.5 | -25.4 | NP_944415 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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