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GenBank Identifier | RefSeq Acc. | Name |
66090969 | NC_007001.1 | Cassia yellow blotch virus RNA3 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
32059 | + | 1706 | 85 | 23.5 | -27.7 | YP_233104 | 5' arm 3' arm | ||
32058 | + | 1596 | 88 | 21 | -21.74 | YP_233104 | 5' arm 3' arm | ||
32056 | + | 582 | 90 | 20.5 | -21.1 | YP_233101 | 5' arm 3' arm | ||
32057 | + | 3040 | 86 | 19 | -19.6 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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