miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
51518014 NC_006146.1 Cercopithecine herpesvirus 15

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28966 - 19586 89 21.5 -24.8 5' arm      3' arm
28851 + 116905 87 20 -24.7 YP_067994 5' arm      3' arm
28867 + 133857 88 21 -24.7 rlcv-mir-rL1-7 5' arm      
29066 - 99651 89 19 -24.7 YP_067981 5' arm      3' arm
28849 + 114755 88 21 -24.6 YP_067993 5' arm      3' arm
28828 + 94429 86 22.5 -24.6 YP_067977 5' arm      3' arm
29080 - 108693 90 19.5 -24.6 YP_067989 5' arm      3' arm
28807 + 68761 89 19.5 -24.6 YP_067959 5' arm      3' arm
28978 - 23551 85 22.5 -24.5 5' arm      3' arm
28969 - 20470 85 22.5 -24.5 5' arm      3' arm
28743 + 16068 88 22 -24.5 5' arm      3' arm
29118 - 141629 87 20.5 -24.5 5' arm      3' arm
28952 - 14308 85 22.5 -24.5 5' arm      3' arm
28746 + 19149 88 22 -24.5 5' arm      3' arm
28749 + 22230 88 22 -24.5 5' arm      3' arm
28960 - 17389 85 22.5 -24.5 5' arm      3' arm
28752 + 25311 88 22 -24.5 5' arm      3' arm
28778 + 47442 86 19 -24.5 YP_067950 5' arm      3' arm
29033 - 73583 81 22 -24.5 5' arm      3' arm
28995 - 29713 85 22.5 -24.5 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.