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| GenBank Identifier | RefSeq Acc. | Name |
| 38638196 | NC_005264.1 | Psittacid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 24411 | + | 57075 | 89 | 20.5 | -24.1 | NP_944409 | 5' arm 3' arm | ||
| 24407 | + | 54370 | 88 | 20.5 | -24.1 | 5' arm 3' arm | |||
| 24348 | + | 17143 | 89 | 20.5 | -24 | NP_944388 | 5' arm 3' arm | ||
| 24667 | - | 103251 | 90 | 20.5 | -24 | NP_944431 | 5' arm 3' arm | ||
| 24378 | + | 36468 | 85 | 19 | -24 | NP_944398 | 5' arm 3' arm | ||
| 24345 | + | 13672 | 88 | 19 | -23.9 | NP_944386 | 5' arm 3' arm | ||
| 24414 | + | 59299 | 89 | 19 | -23.9 | NP_944409 | 5' arm 3' arm | ||
| 24455 | + | 90001 | 90 | 21 | -23.9 | NP_944421 | 5' arm 3' arm | ||
| 24685 | - | 115699 | 90 | 21.5 | -23.9 | 5' arm 3' arm | |||
| 24419 | + | 61041 | 86 | 19.5 | -23.9 | NP_944409 | 5' arm 3' arm | ||
| 24415 | + | 59841 | 90 | 21.5 | -23.9 | NP_944409 | 5' arm 3' arm | ||
| 24588 | - | 39440 | 90 | 20 | -23.9 | NP_944400 | 5' arm 3' arm | ||
| 24406 | + | 53918 | 90 | 20 | -23.84 | NP_944405 | 5' arm 3' arm | ||
| 24734 | - | 142501 | 88 | 22 | -23.8 | NP_944447 | 5' arm 3' arm | ||
| 24629 | - | 79808 | 90 | 24 | -23.8 | 5' arm 3' arm | |||
| 24483 | + | 115090 | 79 | 19.5 | -23.72 | NP_944437 | 5' arm 3' arm | ||
| 24374 | + | 34482 | 85 | 19.5 | -23.7 | NP_944397 | 5' arm 3' arm | ||
| 24546 | - | 2670 | 90 | 20 | -23.7 | NP_944380 | 5' arm 3' arm | ||
| 24703 | - | 127279 | 89 | 22.5 | -23.7 | NP_944441 | 5' arm 3' arm | ||
| 24532 | + | 154893 | 89 | 22.5 | -23.7 | NP_944452 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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