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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10873 | + | 164250 | 89 | 19.5 | -28.2 | NP_116454 | 5' arm 3' arm | ||
| 10863 | + | 159558 | 90 | 21 | -28.2 | NP_116451 | 5' arm 3' arm | ||
| 11032 | - | 89758 | 90 | 21.5 | -28.1 | NP_116405 | 5' arm 3' arm | ||
| 10744 | + | 65067 | 89 | 21.5 | -28.1 | NP_116387 | 5' arm 3' arm | ||
| 10781 | + | 107458 | 82 | 22.5 | -28.09 | 5' arm 3' arm | |||
| 10829 | + | 135620 | 90 | 20 | -28.01 | NP_116435 | 5' arm 3' arm | ||
| 10998 | - | 71751 | 90 | 23.5 | -28 | NP_116398 | 5' arm 3' arm | ||
| 10733 | + | 45361 | 85 | 21 | -27.94 | NP_116373 | 5' arm 3' arm | ||
| 10952 | - | 46207 | 90 | 23 | -27.8 | NP_116373 | 5' arm 3' arm | ||
| 10753 | + | 76087 | 84 | 20 | -27.7 | NP_116400 | 5' arm 3' arm | ||
| 11080 | - | 110166 | 89 | 19.5 | -27.7 | 3' arm | |||
| 10810 | + | 126304 | 90 | 19.5 | -27.7 | NP_116428 | 5' arm 3' arm | ||
| 10748 | + | 71153 | 90 | 23 | -27.6 | NP_116397 | 5' arm 3' arm | ||
| 11097 | - | 140021 | 87 | 20 | -27.5 | NP_116436 | 5' arm 3' arm | ||
| 10808 | + | 125778 | 87 | 22 | -27.5 | NP_116428 | 5' arm 3' arm | ||
| 10915 | + | 194117 | 90 | 19 | -27.4 | NP_116484 | 5' arm 3' arm | ||
| 10889 | + | 175744 | 90 | 22 | -27.3 | NP_116466 | 5' arm 3' arm | ||
| 11014 | - | 79411 | 90 | 20.5 | -27.2 | NP_116401 | 5' arm 3' arm | ||
| 10821 | + | 131944 | 90 | 27 | -27.2 | NP_116432 | 5' arm 3' arm | ||
| 10924 | - | 12125 | 90 | 20 | -27.1 | NP_116336 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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