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| GenBank Identifier | RefSeq Acc. | Name |
| 10834856 | NC_002577.1 | Gallid herpesvirus 3 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 9654 | + | 130426 | 89 | 27.5 | -27.5 | NP_066819 | 5' arm 3' arm | ||
| 9691 | - | 3912 | 84 | 25.5 | -27.4 | 5' arm 3' arm | |||
| 9651 | + | 129671 | 84 | 25.5 | -27.4 | 5' arm 3' arm | |||
| 9674 | + | 157910 | 89 | 19.5 | -27.4 | NP_066903 | 5' arm 3' arm | ||
| 9766 | - | 139561 | 89 | 19.5 | -27.4 | NP_066903 | 5' arm 3' arm | ||
| 9683 | - | 159 | 87 | 25.5 | -27.2 | 5' arm 3' arm | |||
| 9659 | + | 133424 | 87 | 25.5 | -27.2 | 5' arm 3' arm | |||
| 9715 | - | 27874 | 90 | 22.5 | -27.1 | NP_066838 | 5' arm 3' arm | ||
| 9775 | - | 158417 | 84 | 24 | -27 | NP_066903 | 5' arm 3' arm | ||
| 9665 | + | 139054 | 84 | 24 | -27 | NP_066903 | 5' arm 3' arm | ||
| 9597 | + | 9769 | 90 | 27 | -26.4 | NP_066825 | 5' arm 3' arm | ||
| 9747 | - | 123814 | 90 | 27 | -26.4 | NP_066894 | 5' arm 3' arm | ||
| 9617 | + | 66914 | 81 | 22 | -26.2 | NP_066861 | 5' arm 3' arm | ||
| 9720 | - | 45568 | 85 | 24 | -25.9 | NP_066849 | 5' arm 3' arm | ||
| 9637 | + | 122892 | 88 | 20.5 | -25.9 | NP_066893 | 5' arm 3' arm | ||
| 9705 | - | 10691 | 88 | 20.5 | -25.9 | NP_066893 | 5' arm 3' arm | ||
| 9731 | - | 75274 | 88 | 23 | -25.8 | 5' arm 3' arm | |||
| 9639 | + | 123924 | 90 | 21 | -25.7 | NP_066825 | 5' arm 3' arm | ||
| 9703 | - | 9659 | 90 | 21 | -25.7 | NP_066825 | 5' arm 3' arm | ||
| 9615 | + | 59270 | 90 | 19 | -25.6 | NP_066859 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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