miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2820	-	142577	90	19	-24.7			5' arm      3' arm
2642	+	31075	89	19	-24.4	YP_053066		5' arm      3' arm
2743	-	18882	88	19.5	-24.3	YP_053059		5' arm      3' arm
2734	-	8640	88	20	-24.2	YP_053052		5' arm      3' arm
2781	-	81651	88	23	-24.1	YP_053088		5' arm      3' arm
2750	-	30920	79	19	-24.1	YP_053066		5' arm      3' arm
2737	-	14011	88	21.5	-24	YP_053057		5' arm      3' arm
2819	-	139877	89	20	-24	YP_053122		5' arm      3' arm
2709	+	123283	89	20	-24	YP_053122		5' arm      3' arm
2808	-	122645	90	21	-23.9			5' arm      3' arm
2719	+	140515	90	21	-23.9			5' arm      3' arm
2732	-	5168	89	20.5	-23.9	YP_053050		5' arm      3' arm
2759	-	39885	90	21	-23.9	YP_053069		5' arm      3' arm
2790	-	98696	89	19	-23.8	YP_053098		5' arm      3' arm
2647	+	38064	88	20.5	-23.8	YP_053069		5' arm      3' arm
2660	+	60890	89	22.5	-23.79	YP_053077		5' arm      3' arm
2795	-	110716	85	24	-23.6	YP_053107		5' arm      3' arm
2650	+	47489	90	20	-23.6	YP_053071		5' arm      3' arm
2744	-	20619	89	21.5	-23.5	YP_053060		5' arm      3' arm
2741	-	16891	88	20.5	-23.4	YP_053058		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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