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| GenBank Identifier | RefSeq Acc. | Name |
| 52139181 | NC_006273.1 | Human herpesvirus 5 (wild type strain Merlin) |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29905 | + | 149663 | 89 | 27.5 | -29.9 | YP_081548 | 5' arm 3' arm | ||
| 1814 | - | 21456 | 87 | 20 | -29.9 | NP_783773 | 5' arm 3' arm | ||
| 1761 | + | 182421 | 89 | 21 | -29.9 | 5' arm 3' arm | |||
| 1725 | + | 149285 | 89 | 27.5 | -29.9 | NP_783791 | 5' arm 3' arm | ||
| 29999 | - | 21794 | 87 | 20 | -29.9 | YP_081473 | 5' arm 3' arm | ||
| 1810 | - | 7977 | 89 | 21 | -29.9 | 5' arm 3' arm | |||
| 29945 | + | 192900 | 89 | 23 | -29.7 | YP_081586 | 5' arm 3' arm | ||
| 1784 | + | 210846 | 87 | 28 | -29.7 | NP_783806 | 5' arm 3' arm | ||
| 29964 | + | 216142 | 87 | 28 | -29.7 | YP_081607 | 5' arm 3' arm | ||
| 1940 | - | 123954 | 90 | 21 | -29.7 | NP_040019 | 5' arm 3' arm | ||
| 1782 | + | 209528 | 88 | 20 | -29.7 | NP_783805 | 5' arm 3' arm | ||
| 29962 | + | 214812 | 88 | 20 | -29.7 | YP_081605 | 5' arm 3' arm | ||
| 29972 | + | 219454 | 85 | 20.5 | -29.6 | YP_081608 | 5' arm 3' arm | ||
| 29741 | + | 37940 | 87 | 22 | -29.3 | 5' arm 3' arm | |||
| 1683 | + | 125251 | 89 | 24.5 | -29.2 | NP_040021 | 5' arm 3' arm | ||
| 29856 | + | 125627 | 89 | 24.5 | -29.2 | YP_081534 | 5' arm 3' arm | ||
| 30074 | - | 66777 | 90 | 24.5 | -29.2 | YP_081506 | 5' arm 3' arm | ||
| 1883 | - | 66418 | 90 | 24.5 | -29.2 | NP_039982 | 5' arm 3' arm | ||
| 1573 | + | 41073 | 89 | 20 | -29.1 | NP_039966 | 5' arm 3' arm | ||
| 30001 | - | 23734 | 88 | 19.5 | -29.1 | YP_081476 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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