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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15982 | - | 41091 | 89 | 20 | -28.1 | YP_214046 | 5' arm 3' arm | ||
| 15894 | + | 193912 | 86 | 20.5 | -28.1 | 5' arm 3' arm | |||
| 16198 | - | 193997 | 86 | 19 | -28.1 | 5' arm 3' arm | |||
| 15839 | + | 136946 | 89 | 23.5 | -28.1 | YP_214094 | 5' arm 3' arm | ||
| 16084 | - | 106208 | 84 | 21 | -28.1 | YP_214078 | 5' arm 3' arm | ||
| 15794 | + | 107244 | 89 | 19.5 | -28 | YP_214078 | 5' arm 3' arm | ||
| 16129 | - | 138501 | 90 | 19.5 | -28 | YP_214096 | 5' arm 3' arm | ||
| 16047 | - | 80433 | 90 | 22 | -27.9 | 5' arm 3' arm | |||
| 15660 | + | 384 | 88 | 21.5 | -27.8 | 5' arm 3' arm | |||
| 15852 | + | 146834 | 90 | 19.5 | -27.8 | YP_214102 | 5' arm 3' arm | ||
| 15716 | + | 54580 | 88 | 25 | -27.7 | YP_214054 | 5' arm 3' arm | ||
| 16101 | - | 114824 | 87 | 22 | -27.6 | YP_214083 | 5' arm 3' arm | ||
| 16115 | - | 125290 | 90 | 21.5 | -27.6 | 5' arm 3' arm | |||
| 15899 | + | 196206 | 85 | 21.5 | -27.6 | YP_214140 | 5' arm 3' arm | ||
| 16126 | - | 135268 | 87 | 19.5 | -27.5 | YP_214093 | 5' arm 3' arm | ||
| 15841 | + | 138437 | 89 | 19.5 | -27.4 | YP_214096 | 5' arm 3' arm | ||
| 15913 | + | 208371 | 86 | 20.5 | -27.4 | YP_214150 | 5' arm 3' arm | ||
| 16105 | - | 119058 | 89 | 20 | -27.3 | YP_214085 | 5' arm 3' arm | ||
| 15890 | + | 189922 | 88 | 19 | -27.3 | YP_214135 | 5' arm 3' arm | ||
| 16067 | - | 91768 | 90 | 19 | -27.3 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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